miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 239 ttggaattacttataatttggaacggaggaagtagctc 276
||||||| ||||||||||||||||||||| ||||||||
Sbjct: 38 ttggaatgacttataatttggaacggagggagtagctc 1
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tactcccttcgttccaaattataagtca 40
|||||||| |||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtca 32
>RF00906;MIR1122;ABXC01002486.1/98513-98357 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tactcccttcgttccaaattataagtc 39
|||||||||||||||||||||||||||
Sbjct: 5 tactcccttcgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 247 acttataatttggaacggaggaagtagct 275
||||||||||||||||||||| |||||||
Sbjct: 30 acttataatttggaacggagggagtagct 2
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 aatactcccttcgttccaaattataagtc 39
|||||||||| ||||||||||||||||||
Sbjct: 3 aatactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 tactcccttcgttccaaattataagtcac 41
|||||||| ||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtcac 126
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 247 acttataatttggaacggaggaagtag 273
||||||||||||||||||||| |||||
Sbjct: 129 acttataatttggaacggagggagtag 155
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 atactcccttcgttccaaattataagtc 39
||||||||| ||||||||||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 atactcccttcgttccaaattataagtc 39
||||||||| ||||||||||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 247 acttataatttggaacggaggaagtagc 274
||||||||||||||||||||| ||||||
Sbjct: 129 acttataatttggaacggagggagtagc 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactcccttcgttccaaattataagtc 39
|||||||| ||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtc 128
>RF00906;MIR1122;ABXC01001787.1/79252-79126 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 248 cttataatttggaacggaggaagtagc 274
|||| ||||||||||||||||||||||
Sbjct: 99 cttacaatttggaacggaggaagtagc 125
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactcccttcgttccaaattataagtc 39
|||||||| ||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtc 128
>RF00906;MIR1122;ABXC01002946.1/15272-15115 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 aatactcccttcgttccaaattataagtcac 41
|||||||| | ||||||||||||||||||||
Sbjct: 3 aatactccttccgttccaaattataagtcac 33
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactcccttcgttccaaattataagtc 39
|||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtc 31
