miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 67.9 bits (34), Expect = 9e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 43 tactccctccgtttcaaattataagtcattccaagaatcttg 84
||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 5 tactccctccgttccaaattataagtcattccaataatcttg 46
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 276 aatgacttataatttggaacggagtgagta 305
|||||||||||||||||||||||| |||||
Sbjct: 34 aatgacttataatttggaacggagggagta 5
Score = 48.1 bits (24), Expect = 8e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattccaaga 78
|||||||||||| |||||||||||||||| |||||
Sbjct: 77 tactccctccgtcccaaattataagtcattacaaga 42
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 276 aatgacttataatttggaacggagtgagtac 306
||||||||||||||||| |||||| ||||||
Sbjct: 48 aatgacttataatttgggacggagggagtac 78
>RF00906;MIR1122;ABXC01001279.1/17843-17947 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 43 tactccctccgtttcaaattataagtca 70
||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtttcaaattataagtca 32
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 279 gacttataatttggaacggagtgagtacatc 309
||||||||||||||||||||| |||||||||
Sbjct: 128 gacttataatttggaacggagggagtacatc 158
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtc 69
||||||||||||| |||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtc 128
>RF00906;MIR1122;AACV01021025.1/26769-26650 39947:Oryza sativa
Japonica Group
Length = 120
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 40 atatactccctccgtttcaaattataagtcattc 73
||||||||||||||||||| | ||||||||||||
Sbjct: 2 atatactccctccgtttcacaatataagtcattc 35
>RF00906;MIR1122;AP008216.1/5745760-5745877 39947:Oryza sativa
Japonica Group
Length = 118
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 40 atatactccctccgtttcaaattataagtcattc 73
||||||||||||||||||| | ||||||||||||
Sbjct: 2 atatactccctccgtttcacaatataagtcattc 35
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 281 cttataatttggaacggagtgagtacatc 309
||||||||||||||||||| |||||||||
Sbjct: 124 cttataatttggaacggagggagtacatc 152
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 atactccctccgtttcaaattataagtc 69
|||||||||||||| |||||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 gacttataatttggaacggagtgagta 305
||||||||||||||||||||| |||||
Sbjct: 31 gacttataatttggaacggagggagta 5
>RF00906;MIR1122;ABRL01002327.1/13187-13322 65489:Oryza barthii
Length = 136
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataag 67
|||||||||||||||||||||||||
Sbjct: 132 tactccctccgtttcaaattataag 108
>RF00906;MIR1122;AP004761.3/70716-70562 39947:Oryza sativa
Japonica Group
Length = 155
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 41 tatactccctccgtttcaaattataagtcattc 73
|||||||||||||||||| | ||||||||||||
Sbjct: 3 tatactccctccgtttcacaatataagtcattc 35
>RF00906;MIR1122;CR855156.1/56940-57078 4530:Oryza sativa (rice)
Length = 139
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 41 tatactccctccgtttcaaattataagtcattc 73
|||||||||||||||||| | ||||||||||||
Sbjct: 137 tatactccctccgtttcacaatataagtcattc 105
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 48.1 bits (24), Expect = 8e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 275 aaatgacttataatttggaacggagtgagtac 306
||||| ||||||||||||||||||| ||||||
Sbjct: 114 aaatgtcttataatttggaacggagggagtac 145
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 atactccctccgtttcaaattataagtc 69
|||||||||||||| |||||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 gacttataatttggaacggagtgagta 305
||||||||||||||||||||| |||||
Sbjct: 31 gacttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 atactccctccgtttcaaattataagtc 69
|||||||||||||| |||||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 279 gacttataatttggaacggagtgagta 305
||||||||||||||||||||| |||||
Sbjct: 31 gacttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01006912.1/173040-173190 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 279 gacttataatttggaacggagtgagtac 306
||||||||||||||||||||| ||||||
Sbjct: 31 gacttataatttggaacggagagagtac 4
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 39 aatatactccctccgtttcaaattataagtc 69
||||||| ||||||||| |||||||||||||
Sbjct: 151 aatataccccctccgttccaaattataagtc 121
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtca 70
||||||||||||| ||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtca 127
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 278 tgacttataatttggaacggagtgagta 305
|||||||||||||||||||||| |||||
Sbjct: 127 tgacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 279 gacttataatttggaacggagtgagtac 306
||||||||||||||||||||| ||||||
Sbjct: 31 gacttataatttggaacggagggagtac 4
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 tactccctccgtttcaaattataagtc 69
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtc 31
>RF00906;MIR1122;AL928776.4/138726-138875 4530:Oryza sativa (rice)
Length = 150
Score = 48.1 bits (24), Expect = 8e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 42 atactccctccgtttcaaattataagtcattc 73
||||||||||||||||| | ||||||||||||
Sbjct: 4 atactccctccgtttcataatataagtcattc 35
>RF00906;MIR1122;AAAA02035210.1/16587-16706 39946:Oryza sativa
Indica Group
Length = 120
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 40 atatactccctccgtttcaaattataag 67
||||||||||||||||||||| ||||||
Sbjct: 2 atatactccctccgtttcaaaatataag 29
>RF00906;MIR1122;AAAA02024119.1/11927-11764 39946:Oryza sativa
Indica Group
Length = 164
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 40 atatactccctccgtttcaaattataag 67
||||||||||||||||||| ||||||||
Sbjct: 163 atatactccctccgtttcatattataag 136
>RF01058;MIR806;AACV01007621.1/52559-52322 39947:Oryza sativa
Japonica Group
Length = 238
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 42 atactccctccgtttcaaattat 64
|||||||||||||||||||||||
Sbjct: 238 atactccctccgtttcaaattat 216
>RF00906;MIR1122;AC157502.2/65328-65172 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 atactccctccgtttcaaattataagt 68
||||||||||||||||||| |||||||
Sbjct: 4 atactccctccgtttcaaaatataagt 30
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtc 69
||||||||||||| |||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtc 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 279 gacttataatttggaacggagtgagta 305
||||||||||||||||||||| |||||
Sbjct: 128 gacttataatttggaacggagggagta 154
>RF00906;MIR1122;AAAA02024426.1/6236-6378 39946:Oryza sativa Indica
Group
Length = 143
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 42 atactccctccgtttcaaattataagtcatt 72
||||||||||||||||| | |||||||||||
Sbjct: 140 atactccctccgtttcacaatataagtcatt 110
>RF00906;MIR1122;AAAA02031088.1/15871-15728 39946:Oryza sativa
Indica Group
Length = 144
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 140 tactccctccgtttcacaatataagtcattc 110
>RF00906;MIR1122;AC111015.2/7663-7824 39947:Oryza sativa Japonica
Group
Length = 162
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 158 tactccctccgtttcacaatataagtcattc 128
>RF00906;MIR1122;AY947024.1/140-5 4530:Oryza sativa (rice)
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 132 tactccctccgtttcacaatataagtcattc 102
>RF00906;MIR1122;AP005879.3/69009-69170 39947:Oryza sativa Japonica
Group
Length = 162
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 158 tactccctccgtttcacaatataagtcattc 128
>RF00906;MIR1122;AAAA02003204.1/17037-17198 39946:Oryza sativa
Indica Group
Length = 162
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 39 aatatactccctccgtttcaaattataagtcattc 73
|||||||||||||||||||| | | ||||||||||
Sbjct: 1 aatatactccctccgtttcataatgtaagtcattc 35
>RF00906;MIR1122;AP004694.3/155364-155519 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 42 atactccctccgtttcaaattataagtcatt 72
||||||||||||||||| | |||||||||||
Sbjct: 153 atactccctccgtttcacaatataagtcatt 123
>RF00906;MIR1122;AL731751.4/92313-92451 4530:Oryza sativa (rice)
Length = 139
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 5 tactccctccgtttcacaatataagtcattc 35
>RF00906;MIR1122;AACV01021328.1/31319-31454 39947:Oryza sativa
Japonica Group
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 5 tactccctccgtttcacaatataagtcattc 35
>RF00906;MIR1122;AACV01010803.1/31756-31905 39947:Oryza sativa
Japonica Group
Length = 150
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 39 aatatactccctccgtttcaaattataagtcattc 73
|||||||||||||||||||| | | ||||||||||
Sbjct: 1 aatatactccctccgtttcacaatgtaagtcattc 35
>RF00906;MIR1122;AP002866.1/46564-46725 39947:Oryza sativa
Japonica Group
Length = 162
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 39 aatatactccctccgtttcaaattataagtcattc 73
|||||||||||||||||||| | | ||||||||||
Sbjct: 1 aatatactccctccgtttcataatgtaagtcattc 35
>RF00906;MIR1122;AC145396.3/45626-45471 39947:Oryza sativa Japonica
Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 152 tactccctccgtttcacaatataagtcattc 122
>RF00906;MIR1122;AAAA02007268.1/12026-11902 39946:Oryza sativa
Indica Group
Length = 125
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 39 aatatactccctccgtttcaaattataagtcattc 73
|||||||||||||||||||| | | ||||||||||
Sbjct: 125 aatatactccctccgtttcacaatctaagtcattc 91
>RF00906;MIR1122;AACV01003992.1/29908-29746 39947:Oryza sativa
Japonica Group
Length = 163
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tatactccctccgtttcaaattataag 67
|||||||||||||||||| ||||||||
Sbjct: 3 tatactccctccgtttcatattataag 29
>RF00906;MIR1122;AP005701.3/56841-57000 39947:Oryza sativa Japonica
Group
Length = 160
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 156 tactccctccgtttcacaatataagtcattc 126
>RF00906;MIR1122;AC146948.2/15882-15739 39947:Oryza sativa Japonica
Group
Length = 144
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 140 tactccctccgtttcacaatataagtcattc 110
>RF00906;MIR1122;AP004566.3/127143-127010 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 43 tactccctccgtttcaaattataagtcattc 73
|||||||||||||||| | ||||||||||||
Sbjct: 5 tactccctccgtttcacaatataagtcattc 35
