miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01000115.1/34151-34263 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 64 attttgttatgtacatagacatatgttatatctaggtgcatagcaaa 110
|||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct: 81 attttgctatgtatctagacatatgttatatctaggtacatagcaaa 35
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 130 ccaaaacgacctacattttggaacggagggagtaga 165
|||||||||| |||| ||||||||||||||||||||
Sbjct: 38 ccaaaacgacttacaatttggaacggagggagtaga 3
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 130 ccaaaacgacctacattttggaacggaggga 160
|||||||||| | ||||||||||||||||||
Sbjct: 115 ccaaaacgacttgcattttggaacggaggga 145
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 57 ttcatatattttgttatgtacatagacatatgttatatctaggtgcatagcaaa 110
|||||| |||||| |||||| ||||||||| | |||||||||||||||||||
Sbjct: 48 ttcatacattttgctatgtatctagacatattatttatctaggtgcatagcaaa 101
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 141 tacattttggaacggagggagtagata 167
|||| ||||||||||||||||||||||
Sbjct: 27 tacaatttggaacggagggagtagata 1
>RF00906;MIR1122;ABXC01004969.1/59800-59956 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 81/99 (81%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 12 ctactccctctgttccaaaatgttggtcattttgacttttctagattcatatattttgtt 71
|||||||||| |||||||| | | |||| |||||||||| | | | |||| |||||| |
Sbjct: 154 ctactccctcagttccaaattataagtcactttgacttttttgg-tacatagattttgct 96
Query: 72 atgtacatagacatatgttatatctaggtgcatagcaaa 110
||| | |||||||||||||||| ||| | |||||||||
Sbjct: 95 atgaatctagacatatgttatatgtagatacatagcaaa 57
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 134 aacgacctacattttggaacggagggagtag 164
|||||| |||| |||||||||||||||||||
Sbjct: 34 aacgacttacaatttggaacggagggagtag 4
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 144 attttggaacggagggagtagat 166
|||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtagat 2
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 tacattttggaacggagggagtagata 167
|||||||||| ||||||||||||||||
Sbjct: 79 tacattttgggacggagggagtagata 105
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 141 tacattttggaacggagggagtagata 167
|||||||||| ||||||||||||||||
Sbjct: 79 tacattttgggacggagggagtagata 105
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 attttggaacggagggagtaga 165
||||||||||||||||||||||
Sbjct: 66 attttggaacggagggagtaga 87
>RF00906;MIR1122;AAAA02007747.1/9703-9846 39946:Oryza sativa Indica
Group
Length = 144
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 140 ctacattttggaacggagggagtaga 165
||||||| ||||||||||||||||||
Sbjct: 117 ctacattatggaacggagggagtaga 142
>RF00906;MIR1122;AP008209.1/1122239-1122380 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 140 ctacattttggaacggagggagtaga 165
||||||| ||||||||||||||||||
Sbjct: 28 ctacattatggaacggagggagtaga 3
>RF00906;MIR1122;AAAA02028021.1/47476-47381 39946:Oryza sativa
Indica Group
Length = 96
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 ttttggaacggagggagtagat 166
||||||||||||||||||||||
Sbjct: 23 ttttggaacggagggagtagat 2
