miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgcaacagcagctgcatc 52
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 119 ctgacagagagagaagtgagcacgcagcagcagctgcatc 80
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 97 cagtctggccgctgcatgctcactctcttctgtcag 132
||||||| |||||| ||||||||||||||||||||
Sbjct: 36 cagtctgcccgctgtgtgctcactctcttctgtcag 1
>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgcaacagcagctgcatctaggcctgcatccatcca 70
|||||||| |||||||||||||||||||||||||||| |||| | | ||||||||||
Sbjct: 124 ctgacagaaagagaagtgagcacgcaacagcagctgcgcctagacatccatccatcca 67
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 92 agatacagtctggccgctgcatgctcactctcttctgtcag 132
|||| ||||||||||| ||| ||||||||||||||||||||
Sbjct: 41 agatgcagtctggccgatgcgtgctcactctcttctgtcag 1
>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
Length = 117
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgcaacagcagctgc 49
|||||||| ||||||||||||||||||||||||||||
Sbjct: 117 ctgacagaaagagaagtgagcacgcaacagcagctgc 81
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 92 agatacagtctggccgctgcatgctcactctcttctgtcag 132
|||| ||||||||||| ||| ||||||||||||||||||||
Sbjct: 41 agatgcagtctggccgatgcgtgctcactctcttctgtcag 1
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 60.0 bits (30), Expect = 9e-09
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 87 atttcagatacagtctggccgctgcatgctcactctcttctgtcag 132
||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct: 46 atttcagatgcagtctgcccgctgtgtgctcactctcttctgtcag 1
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgcaac 40
||||||||||||||||||||||||||||
Sbjct: 114 ctgacagagagagaagtgagcacgcaac 87
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa Japonica
Group
Length = 112
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 89 ttcagatacagtctggccgctgcatgctcactctcttctgtcag 132
||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct: 44 ttcagatgcagtctgcccgctgtgtgctcactctcttctgtcag 1
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgcaac 40
||||||||||||||||||||||||||||
Sbjct: 112 ctgacagagagagaagtgagcacgcaac 85
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgc 37
||||||||||||||||||||||||
Sbjct: 90 tgacagagagagaagtgagcacgc 67
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgcaacagca 44
||||||| |||||||||||||||||| ||||
Sbjct: 81 tgacagaaagagaagtgagcacgcaaaagca 51
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcac 35
|||||||||||||||||||||||
Sbjct: 103 ctgacagagagagaagtgagcac 81
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcac 35
|||||||||||||||||||||||
Sbjct: 93 ctgacagagagagaagtgagcac 71
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgca 38
|||||||| |||||||||||||||||
Sbjct: 82 ctgacagaaagagaagtgagcacgca 57
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgcaa 39
||||||| ||||||||||||||||||
Sbjct: 81 tgacagaaagagaagtgagcacgcaa 56
