miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 122 tatttccggacggagggagtatatg 146
|||||||||||||||||||||||||
Sbjct: 101 tatttccggacggagggagtatatg 125
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 tatttccggacggagggagtata 144
|||||||||||||||||||||||
Sbjct: 111 tatttccggacggagggagtata 133
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tatttccggacggagggagtat 143
||||||||||||||||||||||
Sbjct: 25 tatttccggacggagggagtat 4
>RF00906;MIR1122;AY083682.1/10279-10145 4498:Avena sativa (oat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 tctagattcacacgtatctatacactaaaacacgt 85
||||||||| || ||||||| ||||||||||||||
Sbjct: 41 tctagattcgcatgtatctacacactaaaacacgt 75
>RF01058;MIR806;AACV01007528.1/40785-40545 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 14 gtactccatccgtcctaaaataagtg 39
||||||| ||||||||||||||||||
Sbjct: 241 gtactccctccgtcctaaaataagtg 216
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 acttatttccggacggagggagtata 144
||||||||| ||||||||||||||||
Sbjct: 80 acttatttcgggacggagggagtata 105
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tatttccggacggagggagtat 143
||||||||||||||||||||||
Sbjct: 101 tatttccggacggagggagtat 122
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tatttccggacggagggagtat 143
||||||||||||||||||||||
Sbjct: 25 tatttccggacggagggagtat 4
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tatttccggacggagggagtat 143
||||||||||||||||||||||
Sbjct: 25 tatttccggacggagggagtat 4
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 62 acgtatctatacactaaaacacgtctatatacat 95
||||||||||| ||||||| ||||||| ||||||
Sbjct: 75 acgtatctatatactaaaatacgtctagatacat 42
