miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 61.9 bits (31), Expect = 3e-09
Identities = 107/127 (84%), Gaps = 4/127 (3%)
Strand = Plus / Plus
Query: 40 gttttggctttttctagatgcatagcttttgctatacatctacatatatgtttatgtcta 99
|||||||||||| ||| || |||| |||||| ||| |||||| ||||||||| |||||||
Sbjct: 29 gttttggctttt-ctatattcataacttttggtatgcatctagatatatgtt-atgtcta 86
Query: 100 ggtgcgtag-caaagacaatgaatttagaaaagccaaagcgactaataatttgggacgga 158
| | | ||| ||||| | |||||| |||||| |||||| || || ||| |||||||||||
Sbjct: 87 gattcatagtcaaag-ctatgaatctagaaatgccaaaacgtcttatagtttgggacgga 145
Query: 159 gggagta 165
|||||||
Sbjct: 146 gggagta 152
Score = 46.1 bits (23), Expect = 2e-04
Identities = 43/49 (87%), Gaps = 3/49 (6%)
Strand = Plus / Minus
Query: 117 atgaatttagaaaagccaaagcgactaataatttgggacggagggagta 165
|||||| ||||||||||||| ||| ||||||||| ||||||||||||
Sbjct: 50 atgaatatagaaaagccaaa---acttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 60.0 bits (30), Expect = 1e-08
Identities = 63/73 (86%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 26 ccaaattattagtcgttttggctttttctagatgcatagcttttgctatacatctacata 85
||||||||| || |||||||||||| |||||| |||||||||||||| ||| ||| |||
Sbjct: 98 ccaaattataagacgttttggcttt--ctagattcatagcttttgctacacacctagata 41
Query: 86 tatgtttatgtct 98
|| ||| ||||||
Sbjct: 40 taagttaatgtct 28
Score = 54.0 bits (27), Expect = 7e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 91 ttatgtctaggtgcgtagcaaagacaatgaatttagaaaagccaaagcgactaataattt 150
|||| |||||||| |||||||| | |||||| |||||| |||||| || || |||||||
Sbjct: 38 ttatatctaggtgtgtagcaaaagctatgaatctagaaa-gccaaaacgtcttataattt 96
Query: 151 gggacggagggagta 165
|| ||||||||||||
Sbjct: 97 ggaacggagggagta 111
>RF00906;MIR1122;ABXC01000098.1/126393-126501 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 58.0 bits (29), Expect = 4e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 13 tactctcttcatcccaaattattagtcgttttggctttttctagatgcatagcttttgct 72
||||| || ||||||||||||| || ||||||||| |||||||||| ||| ||||||||
Sbjct: 5 tactccctccatcccaaattatgagacgttttggc-ttttctagatacattacttttgct 63
Query: 73 atacatcta 81
| |||||||
Sbjct: 64 acacatcta 72
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 124 tagaaaagccaaagcgactaataatttgggacggagggagta 165
||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 46 tagaaaagccaaaacgtctcataatttgggatggagggagta 5
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 127 aaaagccaaagcgactaataatttgggacggagggagtat 166
||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 43 aaaagtcaaagcgacttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 127 aaaagccaaagcgactaataatttgggacggagggagtat 166
||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 43 aaaagtcaaagcgacttataatttggaacggagggagtat 4
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 127 aaaagccaaagcgactaataatttgggacggagggagta 165
||||| ||||||| || ||||||||| ||||||||||||
Sbjct: 110 aaaagtcaaagcggcttataatttggaacggagggagta 148
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 56.0 bits (28), Expect = 2e-07
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 10 ttatactctcttcatcccaaattattagtcgttttggctttttctagatgcatagctttt 69
|||||||| || ||||||||||||| || | ||||||| ||| |||||| ||||||||||
Sbjct: 153 ttatactccctccatcccaaattataagacattttggc-tttactagatacatagctttt 95
Query: 70 gcta 73
||||
Sbjct: 94 gcta 91
Score = 48.1 bits (24), Expect = 4e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 96 tctaggtgcgtagcaaagacaatgaatttagaaaagccaaagcgactaataatttgggac 155
|||| |||||||||||| | ||| || ||| ||||||||| | || |||||||||||
Sbjct: 81 tctaagtgcgtagcaaaagctatgtatctagtaaagccaaaatgtcttataatttgggat 140
Query: 156 ggagggagtata 167
||||||||||||
Sbjct: 141 ggagggagtata 152
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 127 aaaagccaaagcgactaataatttgggacggagggagta 165
||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 116 aaaagtcaaagcgacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 124 tagaaaagccaaagcgactaataatttgggacggagggagtat 166
||||||||||| | ||||| ||||||||| |||||||||||||
Sbjct: 46 tagaaaagccagaacgacttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 127 aaaagccaaagcgactaataatttgggacggagggagta 165
||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 116 aaaagtcaaagcgacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01000255.1/62068-61965 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 117 atgaatttagaaaagccaaagcgactaataatttgg 152
|||||||||||||||||||| || || |||||||||
Sbjct: 43 atgaatttagaaaagccaaaacgtcttataatttgg 78
>RF00906;MIR1122;AAAA02004295.1/15025-15180 39946:Oryza sativa
Indica Group
Length = 156
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 141 ctaataatttgggacggagggagtatat 168
|||||| |||||||||||||||||||||
Sbjct: 128 ctaatattttgggacggagggagtatat 155
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 139 gactaataatttgggacggagggagta 165
|||| ||||||||||||||||||||||
Sbjct: 51 gacttataatttgggacggagggagta 77
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 46.1 bits (23), Expect = 2e-04
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 96 tctaggtgcgtagcaaagacaatgaatttagaaaagccaaagcgactaataatttgggac 155
|||| |||| ||||||| | |||||| ||||||| ||||| || || ||||||||| |
Sbjct: 89 tctaagtgcatagcaaaagccatgaatctagaaaacccaaaacgtcttataatttggaat 148
Query: 156 ggagggagtat 166
|||||||||||
Sbjct: 149 ggagggagtat 159
Score = 46.1 bits (23), Expect = 2e-04
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 12 atactctcttcatcccaaattattagtcgttttggctttttctagatgcatagcttttgc 71
|||||| || ||| ||||||||| || |||||||| |||| |||||| ||| ||||||||
Sbjct: 159 atactccctccattccaaattataagacgttttgggtttt-ctagattcatggcttttgc 101
Query: 72 tat 74
|||
Sbjct: 100 tat 98
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 6e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 36 agtcgttttggctttttctagatgcatagctttt 69
||||||||||||||||| ||||| ||||||||||
Sbjct: 125 agtcgttttggcttttt-tagatacatagctttt 93
>RF00906;MIR1122;AY761662.1/398-280 4558:Sorghum bicolor (sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 6e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 22 catcccaaattattagtcgttttggctttttctagatgcata 63
||||||||||||| |||||||||| ||||||||||| ||||
Sbjct: 106 catcccaaattataggtcgttttgg-tttttctagatacata 66
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 138 cgactaataatttgggacggagggagtata 167
|||| |||||||| ||||||||||||||||
Sbjct: 32 cgacaaataatttcggacggagggagtata 3
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 145 taatttgggacggagggagtat 166
||||||||||||||||||||||
Sbjct: 25 taatttgggacggagggagtat 4
>RF00906;MIR1122;AAAA02012747.1/1212-1288 39946:Oryza sativa Indica
Group
Length = 77
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tttgggacggagggagtatata 169
||||||||||||||||||||||
Sbjct: 56 tttgggacggagggagtatata 77
>RF00906;MIR1122;AAAA02007259.1/4313-4455 39946:Oryza sativa Indica
Group
Length = 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 148 tttgggacggagggagtatata 169
||||||||||||||||||||||
Sbjct: 22 tttgggacggagggagtatata 1
>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
Group
Length = 160
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 148 tttgggacggagggagtatata 169
||||||||||||||||||||||
Sbjct: 22 tttgggacggagggagtatata 1
>RF00906;MIR1122;AP004047.3/87830-87972 39947:Oryza sativa Japonica
Group
Length = 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 148 tttgggacggagggagtatata 169
||||||||||||||||||||||
Sbjct: 22 tttgggacggagggagtatata 1
>RF00906;MIR1122;AC226266.1/92361-92224 63629:Oryza minuta
Length = 138
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 148 tttgggacggagggagtatata 169
||||||||||||||||||||||
Sbjct: 117 tttgggacggagggagtatata 138
>RF00906;MIR1122;AP008218.1/2340117-2339983 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 148 tttgggacggagggagtatata 169
||||||||||||||||||||||
Sbjct: 22 tttgggacggagggagtatata 1
>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 148 tttgggacggagggagtatata 169
||||||||||||||||||||||
Sbjct: 22 tttgggacggagggagtatata 1
