miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 261 tcttgaaatgacttataatttgggacggagggagta 296
||||| ||||||||||||||||||||||||||||||
Sbjct: 42 tcttgtaatgacttataatttgggacggagggagta 77
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 33 tactccttccgttccaaattataagtcattc 63
|||||| ||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtcattc 35
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 267 aatgacttataatttgggacggagggagta 296
||||||||||||||||| ||||||||||||
Sbjct: 34 aatgacttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01002946.1/15272-15115 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 58.0 bits (29), Expect = 8e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 32 atactccttccgttccaaattataagtca 60
|||||||||||||||||||||||||||||
Sbjct: 4 atactccttccgttccaaattataagtca 32
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 33 tactccttccgttccaaattataagtc 59
|||||||||||||||||||||||||||
Sbjct: 154 tactccttccgttccaaattataagtc 128
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 266 aaatgacttataatttgggacggagggagtatat 299
|||| ||||||| |||||||||||||||||||||
Sbjct: 35 aaatcacttatattttgggacggagggagtatat 2
>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
Japonica Group
Length = 112
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 271 acttataatttgggacggagggagtatata 300
||||||| ||||||||||||||||||||||
Sbjct: 30 acttatattttgggacggagggagtatata 1
>RF01058;MIR806;AAAA02017197.1/13871-14114 39946:Oryza sativa Indica
Group
Length = 244
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 145 tatcattagattctttgttaattatatttttat 177
||||||| ||||||||||||| |||||||||||
Sbjct: 105 tatcatttgattctttgttaaatatatttttat 137
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 32 atactccttccgttccaaattataagtcattct 64
||||||| |||||||||||||||||||| ||||
Sbjct: 4 atactccctccgttccaaattataagtcgttct 36
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 270 gacttataatttgggacggagggagtat 297
|||||||||||||| |||||||||||||
Sbjct: 31 gacttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 266 aaatgacttataatttgggacggagggagtata 298
||||| |||||||||||||| ||||||||||||
Sbjct: 120 aaatgtcttataatttgggatggagggagtata 152
>RF00906;MIR1122;AC226266.1/92361-92224 63629:Oryza minuta
Length = 138
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatata 300
|||||| ||||||||||||||||||||||
Sbjct: 110 cttatattttgggacggagggagtatata 138
>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
(African rice)
Length = 110
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 271 acttataatttgggacggagggagtatat 299
||||||| |||||||||||||||||||||
Sbjct: 81 acttatattttgggacggagggagtatat 109
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 270 gacttataatttgggacggagggagtat 297
|||||||||||||| |||||||||||||
Sbjct: 31 gacttataatttggaacggagggagtat 4
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 atactccttccgttccaaattataagtc 59
||||||| ||||||||||||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 270 gacttataatttgggacggagggagtat 297
|||||||||||||| |||||||||||||
Sbjct: 31 gacttataatttggaacggagggagtat 4
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 atactccttccgttccaaattataagtc 59
||||||| ||||||||||||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 33 tactccttccgttccaaattataagtca 60
|||||| |||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtca 127
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 269 tgacttataatttgggacggagggagta 296
||||||||||||||| ||||||||||||
Sbjct: 127 tgacttataatttggaacggagggagta 154
>RF00906;MIR1122;AAAA02003593.1/26423-26497 39946:Oryza sativa
Indica Group
Length = 75
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||| |||||||||||||||||||||
Sbjct: 47 cttatattttgggacggagggagtatat 74
>RF00906;MIR1122;AC111016.2/25572-25452 39947:Oryza sativa Japonica
Group
Length = 121
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||| |||||||||||||||||||||
Sbjct: 93 cttatattttgggacggagggagtatat 120
>RF00906;MIR1122;AAAA02017235.1/6832-6953 39946:Oryza sativa Indica
Group
Length = 122
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||||| |||||||||||||||||||
Sbjct: 94 cttataatatgggacggagggagtatat 121
>RF00906;MIR1122;AP008218.1/2340117-2339983 39947:Oryza sativa
Japonica Group
Length = 135
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 273 ttataatttgggacggagggagtatata 300
||||| ||||||||||||||||||||||
Sbjct: 28 ttatattttgggacggagggagtatata 1
>RF00906;MIR1122;AP008208.1/1166338-1166449 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||| |||||||||||||||||||||
Sbjct: 84 cttatattttgggacggagggagtatat 111
>RF00906;MIR1122;AP003760.4/5605-5476 39947:Oryza sativa Japonica
Group
Length = 130
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||| |||||||||||||||||||||
Sbjct: 102 cttatattttgggacggagggagtatat 129
>RF00906;MIR1122;AAAA02006274.1/23456-23551 39946:Oryza sativa
Indica Group
Length = 96
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||| |||||||||||||||||||||
Sbjct: 68 cttatattttgggacggagggagtatat 95
>RF00906;MIR1122;AC093953.2/44822-44955 39947:Oryza sativa Japonica
Group
Length = 134
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||| |||||||||||||||||||||
Sbjct: 106 cttatattttgggacggagggagtatat 133
>RF00906;MIR1122;AK288180.1/1387-1262 39947:Oryza sativa Japonica
Group
Length = 126
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||| |||||||||||||||||||||
Sbjct: 98 cttatattttgggacggagggagtatat 125
>RF00906;MIR1122;AL845346.4/42836-42971 4530:Oryza sativa (rice)
Length = 136
Score = 48.1 bits (24), Expect = 8e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtatat 299
|||||||||| |||||||||||||||||
Sbjct: 108 cttataatttaggacggagggagtatat 135
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 266 aaatgacttataatttgggacggagggagta 296
||||| |||||||||||| ||||||||||||
Sbjct: 114 aaatgtcttataatttggaacggagggagta 144
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 33 tactccttccgttccaaattataagtc 59
|||||| ||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtc 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 270 gacttataatttgggacggagggagta 296
|||||||||||||| ||||||||||||
Sbjct: 128 gacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01000098.1/126393-126501 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 266 aaatgacttataatttgggacggagggagta 296
||||| |||||||||||||| ||||||||||
Sbjct: 75 aaatgtcttataatttgggatggagggagta 105
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tactccttccgttccaaattataagtc 59
|||||| ||||||||||||||||||||
Sbjct: 5 tactccatccgttccaaattataagtc 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 33 tactccttccgttccaaattataagtc 59
|||||| ||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtc 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 270 gacttataatttgggacggagggagta 296
|||||||||||||| ||||||||||||
Sbjct: 128 gacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 270 gacttataatttgggacggagggagta 296
|||||||||||||| ||||||||||||
Sbjct: 31 gacttataatttggaacggagggagta 5
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tactccttccgttccaaattataagtc 59
|||||| ||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtc 31
>RF00906;MIR1122;AY491681.1/77211-77302 4568:Triticum monococcum
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 272 cttataatttgggacggagggagtata 298
|||||| ||||||||||||||||||||
Sbjct: 64 cttatattttgggacggagggagtata 90
>RF00906;MIR1122;AAAA02017235.1/6057-5946 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 273 ttataatttgggacggagggagtatat 299
||||| |||||||||||||||||||||
Sbjct: 28 ttatattttgggacggagggagtatat 2
>RF00906;MIR1122;AC137999.2/12932-12822 39947:Oryza sativa Japonica
Group
Length = 111
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 273 ttataatttgggacggagggagtatat 299
||||| |||||||||||||||||||||
Sbjct: 28 ttatattttgggacggagggagtatat 2
>RF00906;MIR1122;AP008215.1/19940245-19940356 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 273 ttataatttgggacggagggagtatat 299
||||| |||||||||||||||||||||
Sbjct: 85 ttatattttgggacggagggagtatat 111
