miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 63.9 bits (32), Expect = 9e-10
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 71 ttttgacttttctagatacacgacttttgctatgtatt-agacatagtatatatctaggt 129
|||||||||||||||||||| ||||| ||||| ||| ||||||||| |||||||| ||
Sbjct: 33 ttttgacttttctagatacattgcttttactatgcatttagacatagtgtatatctaagt 92
Query: 130 gcatatcaaaagacatgtatctataaaa 157
||||| ||||| ||||||||| ||||
Sbjct: 93 gcatagcaaaaactatgtatctaaaaaa 120
>RF00906;MIR1122;ABXC01004672.1/95113-95007 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 56.0 bits (28), Expect = 2e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 97 ttgctatgtat-tagacatagtatatatctaggtgcatatcaaaagacatgtatctataa 155
||||||||||| ||||||||| ||||||||||||| || |||||| ||||| ||| |
Sbjct: 32 ttgctatgtatctagacatagcgtatatctaggtgcttagcaaaagctatgtacctagga 91
Query: 156 aagccaaaatga 167
||||||||||||
Sbjct: 92 aagccaaaatga 103
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 54.0 bits (27), Expect = 9e-07
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 95 ttttgctatgtat-tagacatagtatatatctaggtgcatatcaaaa 140
||||||||||||| |||||||| ||| |||||||||||||| |||||
Sbjct: 56 ttttgctatgtatctagacatattatttatctaggtgcatagcaaaa 102
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 52.0 bits (26), Expect = 4e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 119 tatatctaggtgcatatcaaaagacatgtatctataaaagccaaaatgaatagtaatttg 178
|||||||| |||| || |||||| ||||||||| |||||||||||| | |||||||
Sbjct: 77 tatatctaagtgcgtagcaaaagctatgtatctagtaaagccaaaatgtcttataatttg 136
Query: 179 ggacggagggagta 192
||| ||||||||||
Sbjct: 137 ggatggagggagta 150
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 84/101 (83%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 95 ttttgctatgtat-tagacatagtatatatctaggtgcatatcaaaagacatgtatctat 153
|||| |||||||| |||||| ||| ||||||| ||||||| ||||||| | ||||| |
Sbjct: 102 ttttactatgtatctagacacagtgcatatctaagtgcatagcaaaaga-acgtatcaag 44
Query: 154 aaaagccaaaatgaatagtaatttgggacggagggagtagt 194
||||||||||||| | |||||||| |||||||||||||
Sbjct: 43 aaaagccaaaatgtcttataatttggaccggagggagtagt 3
>RF00906;MIR1122;ABXC01002870.1/113864-113706 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 108 tagacatagtatatatctaggtgcatatcaaaagacatgtatctataaaagccaaaa 164
|||||||||| |||||||| ||||||| |||| |||| ||||| |||||||||||
Sbjct: 89 tagacatagtgtatatctaagtgcataaagaaagccatgaatctagaaaagccaaaa 33
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 170 agtaatttgggacggagggagtagtat 196
|||||||||| ||||||||||||||||
Sbjct: 27 agtaatttggaacggagggagtagtat 1
>RF00906;MIR1122;ABXC01000098.1/126393-126501 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 69 cgttttgacttttctagatacacgacttttgcta 102
||||||| |||||||||||||| ||||||||||
Sbjct: 31 cgttttggcttttctagatacattacttttgcta 64
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 9e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 123 tctaggtgcatatcaaaagacatgtatctataaaagccaaaatgaatagtaatttgggac 182
|||||||||||| |||||| ||||| ||| | |||||||||||| | ||||||| |
Sbjct: 43 tctaggtgcatagcaaaagctatgtacctagagaagccaaaatgacttacaatttggaat 102
Query: 183 ggagggagta 192
||||||||||
Sbjct: 103 ggagggagta 112
>RF00906;MIR1122;AC104429.2/50540-50620 39947:Oryza sativa Japonica
Group
Length = 81
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 tttgggacggagggagtagtat 196
||||||||||||||||||||||
Sbjct: 60 tttgggacggagggagtagtat 81
>RF00906;MIR1122;AAAA02007985.1/61647-61567 39946:Oryza sativa
Indica Group
Length = 81
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 175 tttgggacggagggagtagtat 196
||||||||||||||||||||||
Sbjct: 22 tttgggacggagggagtagtat 1
>RF00906;MIR1122;AP003046.2/109392-109265 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 tttgggacggagggagtagtat 196
||||||||||||||||||||||
Sbjct: 107 tttgggacggagggagtagtat 128
>RF00906;MIR1122;AL731597.3/103356-103467 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 175 tttgggacggagggagtagtat 196
||||||||||||||||||||||
Sbjct: 91 tttgggacggagggagtagtat 112
