miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 ttctactccctccgttccaaattgtaagt 38
|||||||||||||||||||||||||||||
Sbjct: 2 ttctactccctccgttccaaattgtaagt 30
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tctactccctccgttccaaattgtaag 37
|||||||||||||||||||||||||||
Sbjct: 3 tctactccctccgttccaaattgtaag 29
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgttccaaattgtaagt 38
|||||||||||||||||||||||||||
Sbjct: 4 ctactccctccgttccaaattgtaagt 30
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattgtaag 37
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattgtaag 29
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 ctactccctccgttccaaattgtaagt 38
||||||||||||||||||||| |||||
Sbjct: 4 ctactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 ctactccctccgttccaaattgtaagt 38
||||||||||||||||||||| |||||
Sbjct: 4 ctactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattgtaagt 38
||||||||||||||||||||| |||||
Sbjct: 155 ctactccctccgttccaaattataagt 129
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattgtaagt 38
||||||||||||||||||||| |||||
Sbjct: 155 ctactccctccgttccaaattataagt 129
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 ttctactccctccgttccaaatt 32
|||||||||||||||||||||||
Sbjct: 134 ttctactccctccgttccaaatt 112
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 ttctactccctccgttccaaatt 32
|||||||||||||||||||||||
Sbjct: 113 ttctactccctccgttccaaatt 91
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattgtaag 37
||||||||||||||||||||| ||||
Sbjct: 106 ctactccctccgttccaaattataag 81
>RF00906;MIR1122;ABXC01001787.1/79252-79126 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattgtaag 37
||||| ||||||||||||||||||||
Sbjct: 124 ctacttcctccgttccaaattgtaag 99
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattgtaagt 38
|||||||||||||||||||| |||||
Sbjct: 5 tactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattgtaagt 38
|||||||||||||||||||| |||||
Sbjct: 154 tactccctccgttccaaattataagt 129
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattgtaagt 38
|||||||||||||||||||| |||||
Sbjct: 5 tactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattgtaagt 38
|||||||||||||||||||| |||||
Sbjct: 5 tactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattgtaagt 38
|||||||||| |||||||||||||||
Sbjct: 5 tactccctccattccaaattgtaagt 30
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattgtaagt 38
|||||||||| |||||||||||||||
Sbjct: 112 tactccctccattccaaattgtaagt 87
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattgtaagt 38
|||||||||||||||||||| |||||
Sbjct: 5 tactccctccgttccaaattataagt 30
