miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730895.1/46100-45965 15368:Brachypodium
distachyon
Length = 136
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 491 tactccctccgtccaacaaaagatgtc 517
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccaacaaaagatgtc 31
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 487 tatatactccctccgtccaacaaaagatgtc 517
|||||||||||||||||||||||| ||||||
Sbjct: 136 tatatactccctccgtccaacaaaggatgtc 106
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 491 tactccctccgtccaacaaaagatgtc 517
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccaacaaaagatgtc 31
>RF00906;MIR1122;EU730898.1/64006-63871 15368:Brachypodium
distachyon
Length = 136
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 491 tactccctccgtccaacaaaagatgtc 517
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccaacaaaagatgtc 31
Score = 46.1 bits (23), Expect = 5e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 491 tactccctccgtccaacaaaagatgtc 517
|||||||||||||||||||| ||||||
Sbjct: 132 tactccctccgtccaacaaaggatgtc 106
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 491 tactccctccgtccaacaaaagatgtc 517
|||||||||||||||||||||||||||
Sbjct: 132 tactccctccgtccaacaaaagatgtc 106
>RF00906;MIR1122;EU730894.1/75460-75595 15368:Brachypodium
distachyon
Length = 136
Score = 48.1 bits (24), Expect = 1e-04
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 490 atactccctccgtccaacaaaagatgtc 517
||||||||| ||||||||||||||||||
Sbjct: 4 atactcccttcgtccaacaaaagatgtc 31
>RF01058;MIR806;AAAA02026229.1/38478-38703 39946:Oryza sativa Indica
Group
Length = 226
Score = 46.1 bits (23), Expect = 5e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 atattttgaaacggagggggtat 38
|||||||||||||||||||||||
Sbjct: 204 atattttgaaacggagggggtat 226
>RF00906;MIR1122;EU730897.1/80693-80828 15368:Brachypodium
distachyon
Length = 136
Score = 46.1 bits (23), Expect = 5e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 488 atatactccctccgtccaacaaa 510
|||||||||||||||||||||||
Sbjct: 135 atatactccctccgtccaacaaa 113
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 46.1 bits (23), Expect = 5e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 491 tactccctccgtccaacaaaagatgtc 517
|||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtccaataaaagatgtc 31
>RF00906;MIR1122;AAAA02035210.1/16587-16706 39946:Oryza sativa
Indica Group
Length = 120
Score = 46.1 bits (23), Expect = 5e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 cttatattttgaaacggagggggtata 39
||||||||||||||||||||| |||||
Sbjct: 29 cttatattttgaaacggagggagtata 3
