miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01002132.1/397783-397672 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 26 tgtactccctccgtcccaaaaagatcgttgttct 59
|||||||||||||||||||||||| || ||||||
Sbjct: 110 tgtactccctccgtcccaaaaagaccgctgttct 77
>RF01058;MIR806;ABXC01000117.1/227422-227180 4558:Sorghum bicolor
(sorghum)
Length = 243
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 gtactccctccgtcccaaaaaga 49
|||||||||||||||||||||||
Sbjct: 1 gtactccctccgtcccaaaaaga 23
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 27 gtactccctccgtcccaaaaaga 49
|||||||||||||||||||||||
Sbjct: 243 gtactccctccgtcccaaaaaga 221
>RF01058;MIR806;ABXC01001468.1/134421-134661 4558:Sorghum bicolor
(sorghum)
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 27 gtactccctccgtcccaaaaagatcgttgtt 57
|||||||||||||| |||||||| |||||||
Sbjct: 241 gtactccctccgtctcaaaaagaccgttgtt 211
>RF00906;MIR1122;AP006171.2/9738-9583 39947:Oryza sativa Japonica
Group
Length = 156
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 gtactccctccgtcccaaaaaga 49
|||||||||||||||||||||||
Sbjct: 4 gtactccctccgtcccaaaaaga 26
>RF00906;MIR1122;AAAA02012151.1/19064-18908 39946:Oryza sativa
Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 24 actgtactccctccgtcccaaaa 46
|||||||||||||||||||||||
Sbjct: 157 actgtactccctccgtcccaaaa 135
>RF00906;MIR1122;AACV01018362.1/12376-12241 39947:Oryza sativa
Japonica Group
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 gtactccctccgtcccaaaaaga 49
|||||||||||||||||||||||
Sbjct: 4 gtactccctccgtcccaaaaaga 26
>RF00906;MIR1122;AACV01015141.1/40750-40841 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 gtactccctccgtcccaaaaaga 49
|||||||||||||||||||||||
Sbjct: 4 gtactccctccgtcccaaaaaga 26
