miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 216 bits (109), Expect = 8e-56
Identities = 167/187 (89%), Gaps = 7/187 (3%)
Strand = Plus / Plus
Query: 1 ctctggaagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgcc 60
||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct: 3 ctctggaagagagctctcttcagtccactctaaaatggctgtagagtttcattagctgcc 62
Query: 61 gactcatccattcacctaccaagatccatggacgcggaat-------gtcttggtagctg 113
|||||||||||||||||||||||| |||||||| | || ||||||||||| |
Sbjct: 63 gactcatccattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccg 122
Query: 114 attggatggcgcgggagctaaaattaagctctacgctgtttgtggttggactgaagggtg 173
| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 123 agtgggtggcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtg 182
Query: 174 ctccctt 180
|||||||
Sbjct: 183 ctccctt 189
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa Japonica
Group
Length = 193
Score = 182 bits (92), Expect = 1e-45
Identities = 159/180 (88%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 6 gaagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgccgactc 65
|||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||| ||
Sbjct: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
Query: 66 atccattcacctaccaagatccatggacgcg-gaatgtcttggtagctgattggatggcg 124
||||||||||||||||||| || | | | | || |||||||||| || |||||| ||
Sbjct: 68 atccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactggatgacg 127
Query: 125 cgggagctaaaattaagctctacgctgtttgtggttggactgaagggtgctcccttgctc 184
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 128 cgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcccttgctc 187
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgccgactca 66
||||||||| |||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 67 t 67
|
Sbjct: 69 t 69
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactc 30
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 aagagagctctcttcagtccactc 30
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
