miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 67.9 bits (34), Expect = 7e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtcactccaagaatcttg 54
|||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 5 tactccctccgttccaaattataagtcattccaataatcttg 46
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 10 aggtactccctccgttccaaattataagtca 40
||||||||||||||| |||||||||||||||
Sbjct: 80 aggtactccctccgtcccaaattataagtca 50
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagtcact 42
||||||||||||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtcact 125
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gtactccctccgttccaaattataagt 38
|||||||||| ||||||||||||||||
Sbjct: 4 gtactccctctgttccaaattataagt 30
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 10 aggtactccctccgttccaaattataag 37
||||||||||||||||||||||||||||
Sbjct: 147 aggtactccctccgttccaaattataag 120
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 12 gtactccctccgttccaaattataagtc 39
||||||||||||||||||||||||||||
Sbjct: 155 gtactccctccgttccaaattataagtc 128
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 gtactccctccgttccaaattataagtc 39
||||||||||||||||||||||||||||
Sbjct: 4 gtactccctccgttccaaattataagtc 31
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 16 tccctccgttccaaattataagtc 39
||||||||||||||||||||||||
Sbjct: 150 tccctccgttccaaattataagtc 127
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtc 39
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtc 39
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtc 39
|||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagtc 31
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 gtactccctccgttccaaattataag 37
||||||||||||||||||||||||||
Sbjct: 149 gtactccctccgttccaaattataag 124
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagtc 39
|||||||||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataagtc 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtc 39
|||||| ||||||||||||||||||||
Sbjct: 5 tactccatccgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01001279.1/17843-17947 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 gtactccctccgttccaaattataagtcact 42
|||||||||||||| ||||||||||||||||
Sbjct: 4 gtactccctccgtttcaaattataagtcact 34
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagt 38
||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataagt 30
>RF00906;MIR1122;ABXC01004969.1/59800-59956 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagtcact 42
||||||||| ||||||||||||||||||||
Sbjct: 153 tactccctcagttccaaattataagtcact 124
>RF00906;MIR1122;ABXC01002946.1/15272-15115 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtcact 42
|||||| |||||||||||||||||||||||
Sbjct: 5 tactccttccgttccaaattataagtcact 34
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagtc 39
|||||| ||||||||||||||||||||
Sbjct: 154 tactccttccgttccaaattataagtc 128
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 105 tactccctccgttccaaattataag 81
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 111 tactccctccgttccaaattataag 87
>RF00906;MIR1122;ABXC01006912.1/173040-173190 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 ggtactccctccgttccaaattataagtc 39
||||||| |||||||||||||||||||||
Sbjct: 3 ggtactctctccgttccaaattataagtc 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 17 ccctccgttccaaattataagtc 39
|||||||||||||||||||||||
Sbjct: 143 ccctccgttccaaattataagtc 121
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 9 gaggtactccctccgttccaaatta 33
|||||||||||||||||||||||||
Sbjct: 115 gaggtactccctccgttccaaatta 91
>RF00906;MIR1122;ABXC01002486.1/98513-98357 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 gtactccctccgttccaaattataagtc 39
||||||||| ||||||||||||||||||
Sbjct: 4 gtactcccttcgttccaaattataagtc 31
>RF00906;MIR1122;ABXC01000255.1/62068-61965 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aggtactccctccgttccaaattataag 37
||||||||||||| ||||||||||||||
Sbjct: 2 aggtactccctccattccaaattataag 29
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtc 39
|||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgttccaaattgtaagtc 31
>RF00906;MIR1122;ABXC01003647.1/157196-157057 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gtactccctccgttccaaattataagt 38
|||||||||| ||||||||||||||||
Sbjct: 4 gtactccctctgttccaaattataagt 30
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagtc 39
||||||||| |||||||||||||||||
Sbjct: 136 tactccctctgttccaaattataagtc 110
>RF00906;MIR1122;ABXC01006511.1/264469-264340 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 gtactccctccgttccaaattataagt 38
||||||||||| |||||||||||||||
Sbjct: 4 gtactccctccattccaaattataagt 30
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagtc 39
|||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgttccaaattgtaagtc 31
