miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
          Length = 128

 Score =  123 bits (62), Expect = 2e-27
 Identities = 71/74 (95%)
 Strand = Plus / Plus

                                                                       
Query: 224 ggttttcgggccataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgc 283
           ||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ggttttcgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgc 114

                         
Query: 284 tgcctccctttgcc 297
           ||||||||||||||
Sbjct: 115 tgcctccctttgcc 128



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 28  ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
           |||||| ||||||| ||| |||||||||||||| |||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaa 79




>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
          Length = 128

 Score =  123 bits (62), Expect = 2e-27
 Identities = 65/66 (98%)
 Strand = Plus / Plus

                                                                       
Query: 232 ggccataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccc 291
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63  ggccataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccc 122

                 
Query: 292 tttgcc 297
           ||||||
Sbjct: 123 tttgcc 128



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 244 gattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 290
           |||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 54  gattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8



 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                            
Query: 21 tgcaagtggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
          ||||||||||||||||||||| ||| || |||||||| |  |||||||||
Sbjct: 1  tgcaagtggaggcggcaagctagagacagcaactgcatatcttgcaagaa 50



 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 28  ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
           |||||| ||||||| ||| |||||||||||||  |||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaa 79




>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
          Length = 130

 Score =  121 bits (61), Expect = 6e-27
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                       
Query: 237 taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129

            
Query: 297 c 297
           |
Sbjct: 130 c 130



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 28  ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
           |||||| ||||||| ||| |||||||||||||| |||||||||
Sbjct: 123 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaa 81




>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
          Length = 167

 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                              
Query: 247 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 297
           ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167



 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 28  ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
           |||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 160 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaa 118




>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
          Length = 165

 Score = 81.8 bits (41), Expect = 6e-15
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                            
Query: 242 atgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 290
           |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 110 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158



 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 28  ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaa 70
           |||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 158 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaa 116




>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
          Length = 129

 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                   
Query: 235 cataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 290
           |||||||||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67  cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 28  ggaggcggcaagctcgaggcaacaactgcacaatttgcaagaatatc 74
           |||||| ||||||| |||||| |||||||| || |||||||||||||
Sbjct: 122 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaatatc 76




>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 173

 Score = 77.8 bits (39), Expect = 9e-14
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                              
Query: 247 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 297
           |||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173




>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
          Length = 229

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 247 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 287
           ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229



 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 35  gcaagctcgaggcaacaactgcacaatttgcaagaa 70
           ||||||| |||||||||||||||||| |||||||||
Sbjct: 225 gcaagcttgaggcaacaactgcacaacttgcaagaa 190




>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
          Length = 129

 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 235 cataccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcccttt 294
           |||||||||| |  ||||||||||| |||||||| || ||||||||| ||||||||||||
Sbjct: 67  cataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctcccttt 126

              
Query: 295 gcc 297
           |||
Sbjct: 127 gcc 129



 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 261 tgcagttgttgtctcaagcttgctgcc 287
           ||||||||||||||| |||||||||||
Sbjct: 37  tgcagttgttgtctcgagcttgctgcc 11




>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
          Length = 134

 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 253 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 297
           ||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 90  gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134