miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 9 caagtactccctctgtcccaaattattagtcgttttgattttt 51
||||||||||||| || ||||||||| ||||||||||| ||||
Sbjct: 1 caagtactccctccgttccaaattataagtcgttttgagtttt 43
>RF00906;MIR1122;ABXC01001787.1/79252-79126 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaattattagtcgttttgatttttc 52
|||||||||||| ||||||||| || ||||||| ||||||
Sbjct: 5 tactccctctgttccaaattataagacgttttggtttttc 44
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 12 gtactccctctgtcccaaattattagtcgttttga 46
||||||||||||| ||||||||| ||| |||||||
Sbjct: 4 gtactccctctgttccaaattataagttgttttga 38
>RF00906;MIR1122;AAWT01000151.1/5565-5658 79327:Schmidtea
mediterranea
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaattat 34
||||||||||||||||||||||
Sbjct: 90 tactccctctgtcccaaattat 69
