miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 6 gattactgggccatttctccttgggcagagtgatcaaacctcacattgctggatctgttt 65
|||||| |||||||||||||||||||||||| || || | || |||||||||| | ||
Sbjct: 6 gattaccgggccatttctccttgggcagagtaattgaattttactttgctggatccggtt 65
Query: 66 tgctctgccaaaggagatttgcccagcgatccaca 100
||||||||||||||||||||||||||| |||||||
Sbjct: 66 tgctctgccaaaggagatttgcccagcaatccaca 100
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgcccagcgatccaca 100
||||||||||||||||||||||||| |||||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaatccaca 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gattactgggccatttctccttgggcagag 35
|||||| ||||||| |||||||||||||||
Sbjct: 6 gattaccgggccatgtctccttgggcagag 35
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgcccagcgat 95
|||||||||||||||||||||||||||
Sbjct: 83 tctgccaaaggagatttgcccagcgat 109
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgcccagcgat 95
|||||||||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgcccagcgat 113
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgcccagc 92
||||||||||||||||||||||||
Sbjct: 88 tctgccaaaggagatttgcccagc 111
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccagc 92
|||||||||||||||||||||||
Sbjct: 85 ctgccaaaggagatttgcccagc 107
>RF00445;mir-399;AC160628.37/77264-77379 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 tctgccaaaggagatttgcccagcgat 95
|||||||||| ||||||||||||||||
Sbjct: 84 tctgccaaagaagatttgcccagcgat 110
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccagc 92
|||||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagc 98
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccagc 92
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccag 91
||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccag 107
>RF00445;mir-399;AC004481.3/13991-14099 3702:Arabidopsis thaliana
(thale cress)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ttttgctctgccaaaggagatttgcc 88
|||| |||||||||||||||||||||
Sbjct: 71 ttttcctctgccaaaggagatttgcc 96
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 85 ctctgccaaaggagatttgccc 106
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 67 ctctgccaaaggagatttgccc 88
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ctctgccaaaggagatttgccc 89
||||||||||||||||||||||
Sbjct: 83 ctctgccaaaggagatttgccc 104
>RF00445;mir-399;ABXC01002523.1/15097-15179 4558:Sorghum bicolor
(sorghum)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 ctgccaaaggagatttgcccagcgat 95
|||||||||| |||||||||||||||
Sbjct: 52 ctgccaaaggggatttgcccagcgat 77
