miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01002523.1/15097-15179 4558:Sorghum bicolor
(sorghum)
Length = 83
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 11 aggtccattgcagggcaacactccgttggcaggtgc 46
||||||||||||||||||| ||||||||||||||||
Sbjct: 1 aggtccattgcagggcaaccctccgttggcaggtgc 36
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 74 cctgccaaaggagatttgcccggcgatgcgcct 106
||||||||||| ||||||||| |||||||||||
Sbjct: 51 cctgccaaaggggatttgcccagcgatgcgcct 83
>RF00445;mir-399;AASG02001979.1/23540-23433 3988:Ricinus communis
(castor bean)
Length = 108
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 tgccaaaggagatttgcccggcgat 100
|||||||||||||||||||||||||
Sbjct: 78 tgccaaaggagatttgcccggcgat 102
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 74 cctgccaaaggagatttgcccggc 97
||||||||||||||||||||||||
Sbjct: 62 cctgccaaaggagatttgcccggc 85
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 ctgccaaaggagatttgcccggc 97
|||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccggc 100
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 ctgccaaaggagatttgcccggc 97
|||||||||||||||||||||||
Sbjct: 85 ctgccaaaggagatttgcccggc 107
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 ctgccaaaggagatttgcccgg 96
||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccgg 108
>RF00445;mir-399;AARH01014738.1/2159-2280 3694:Populus trichocarpa
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgccaaaggagatttgcccggc 97
||||||||||||||||||||||
Sbjct: 92 tgccaaaggagatttgcccggc 113
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 ctgccaaaggagatttgcccggcgat 100
|||||||||||||||||||| |||||
Sbjct: 84 ctgccaaaggagatttgcccagcgat 109
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 acctgccaaaggagatttgccc 94
||||||||||||||||||||||
Sbjct: 83 acctgccaaaggagatttgccc 104
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 ctgccaaaggagatttgcccggcgat 100
|||||||||||||||||||| |||||
Sbjct: 88 ctgccaaaggagatttgcccagcgat 113
