miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 79 tgtctagattcattcaaattttaacaaacttgagacatct 118
||||||||| |||||||||||| |||||||||||||||||
Sbjct: 64 tgtctagatacattcaaattttgacaaacttgagacatct 25
>RF00906;MIR1122;EU730894.1/75460-75595 15368:Brachypodium
distachyon
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 62 atctatatgctaaatagtgtctagattcattcaaattttaacaaacttgagacatct 118
|||||||| |||| | ||||||||| ||||||||||| |||||||||||||||||
Sbjct: 81 atctatatactaagtcatgtctagatatattcaaattttgacaaacttgagacatct 25
>RF00906;MIR1122;EU730897.1/80693-80828 15368:Brachypodium
distachyon
Length = 136
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 79 tgtctagattcattcaaattttaacaaacttgagacatct 118
|||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 64 tgtctagatttattcaaattttgacaaacttaagacatct 25
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 79 tgtctagattcattcaaattttaacaaacttgagacatct 118
|||||||||| || |||||||| ||||| |||||||||||
Sbjct: 64 tgtctagatttatccaaattttgacaaatttgagacatct 25
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tgtactccctccgttccataatagatg 35
|||||||||||||||||| ||||||||
Sbjct: 103 tgtactccctccgttccaaaatagatg 77
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccataatagatg 35
||||||||||||||||| ||||||||
Sbjct: 4 gtactccctccgttccaaaatagatg 29
>RF00906;MIR1122;EU730901.1/71726-71862 15368:Brachypodium
distachyon
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 79 tgtctagattcattcaaattttaacaaacttgagacatc 117
||||||||| ||| ||| |||| ||||||||||||||||
Sbjct: 64 tgtctagatacatccaatttttgacaaacttgagacatc 26
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 76 tagtgtctagattcattcaaattttaacaaacttgagacatct 118
|||||| ||||| | |||||||||| | |||||||||||||||
Sbjct: 70 tagtgtatagatacgttcaaattttgataaacttgagacatct 112
>RF00906;MIR1122;AAAA02012907.1/4650-4807 39946:Oryza sativa
Indica Group
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtactccctccgttccataata 31
|||||||||||||||||||||||
Sbjct: 3 tgtactccctccgttccataata 25
>RF00906;MIR1122;AP002869.1/81681-81526 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtactccctccgttccataata 31
|||||||||||||||||||||||
Sbjct: 3 tgtactccctccgttccataata 25
>RF00906;MIR1122;AAAA02001357.1/661-786 39946:Oryza sativa Indica
Group
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtactccctccgttccataata 31
|||||||||||||||||||||||
Sbjct: 3 tgtactccctccgttccataata 25
>RF01058;MIR806;AP005184.5/84409-84174 39947:Oryza sativa Japonica
Group
Length = 236
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccataata 31
||||||||||||||||||||||
Sbjct: 1 gtactccctccgttccataata 22
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccataatagatg 35
||||||||||||||||| ||||||||
Sbjct: 4 gtactccctccgttccaaaatagatg 29
>RF00906;MIR1122;EU730898.1/64006-63871 15368:Brachypodium
distachyon
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 76 tagtgtctagattcattcaaattttaacaaacttgagacatc 117
|||||| ||||| ||||||||||| | |||| ||||||||||
Sbjct: 70 tagtgtatagatgcattcaaatttgatcaaagttgagacatc 111
>RF00906;MIR1122;ABRL01001248.1/28987-28884 65489:Oryza barthii
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 attgtactccctccgttccata 28
||||||||||||||||||||||
Sbjct: 1 attgtactccctccgttccata 22
>RF00906;MIR1122;AACV01009198.1/25225-25351 39947:Oryza sativa
Japonica Group
Length = 127
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtactccctccgttccataata 31
||||||||||||||||||||||
Sbjct: 4 gtactccctccgttccataata 25
