miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 63.9 bits (32), Expect = 7e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 15 tccctccgttccaaaatgtaggtcgttttggctgttttagattcatag 62
|||||||||||||||||| | |||||||||||| |||||||| |||||
Sbjct: 145 tccctccgttccaaaatgcaagtcgttttggcttttttagatacatag 98
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 12 tactccctccgttccaaaatgtaggtcgttttggct 47
|||||||||||||||||| |||| ||||||||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgttttggct 40
>RF00906;MIR1122;ABXC01000115.1/34151-34263 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 61.9 bits (31), Expect = 3e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 65 tttgctatgcacatagagataacatatgtctagatacatagtaaaat 111
||||||||| || |||| ||||||||||||||||||||||| |||||
Sbjct: 35 tttgctatgtacctagatataacatatgtctagatacatagcaaaat 81
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 60.0 bits (30), Expect = 1e-08
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 49 ttttagattcatagtgtttgctatgcacatagagataacatatgtctagatacatagtaa 108
|||||||| |||||| |||||||||||| |||| ||| |||||||| || ||||||||
Sbjct: 118 ttttagatacatagtttttgctatgcacttagatatacactatgtctaaatgcatagtaa 59
Query: 109 aatatatgaatctagaaatgtcaaaa 134
|| ||| ||||||||| |||||||
Sbjct: 58 aagcaatgtatctagaaaagtcaaaa 33
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 89 tatgtctagatacatagtaaaatatatgaatctagaaatgtcaaaa 134
||||||||||| |||||| ||| |||||||||||||||| |||||
Sbjct: 79 tatgtctagattcatagtcaaagctatgaatctagaaatgccaaaa 124
Score = 46.1 bits (23), Expect = 2e-04
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 12 tactccctccgttccaaaatgtaggtcgttttggctgttttagattcatagtgtttgcta 71
|||||||||||| ||||| | || | ||||||||| || ||||||||||| || |||
Sbjct: 152 tactccctccgtcccaaactataagacgttttggcatttctagattcatagctttgacta 93
Query: 72 tgcacatagagataacatatgtctagatacatagtaaaatatatgaatctagaaa 126
|| | |||| ||||||||| ||||||| |||| |||| ||||||| ||||||
Sbjct: 92 tgaatctagacataacatatatctagatgcataccaaaagttatgaatatagaaa 38
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 52.0 bits (26), Expect = 3e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 10 attactccctccgttccaaaatgtaggtcgttttggctgttttagattcatagtgtttgc 69
|||||||||||||||||||| | || | |||||||||| || ||||||||||| |||||
Sbjct: 113 attactccctccgttccaaattataagacgttttggct-ttctagattcatagcttttgc 55
Query: 70 ta 71
||
Sbjct: 54 ta 53
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 65 tttgctatgcacatagagataacatatgtctagatacatagtaaaatatatgaa 118
|||||||||||| |||| | | |||||||||||||||||| ||||| ||||||
Sbjct: 101 tttgctatgcacctagataaataatatgtctagatacatagcaaaatgtatgaa 48
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 90 atgtctagatacatagtaaaatatatgaatctagaaa 126
||||||||||||||||||||| |||| |||||||||
Sbjct: 69 atgtctagatacatagtaaaagctatgtatctagaaa 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgttccaaaatgtaggtcgtt 41
|||||||||||||||||| |||| ||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgtt 34
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 tgtctagatacatagtaaaatatatgaatctagaaa 126
|||||||||||||||||||| | ||| |||||||||
Sbjct: 83 tgtctagatacatagtaaaaaaaatgtatctagaaa 118
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 48.1 bits (24), Expect = 4e-05
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 12 tactccctccgttccaaaatgtaggtcgttttggctgttttagattcatagtgtttgcta 71
|||||||||| ||||||| | || | |||||||| | || ||||||||| | |||||||
Sbjct: 158 tactccctccattccaaattataagacgttttgggttttctagattcatggcttttgcta 99
Query: 72 tgcacatagagataacatatgtctagatacatagta 107
||||| |||| | | ||||||||||| |||||||
Sbjct: 98 tgcacttagatacacgctatgtctagatgcatagta 63
>RF00906;MIR1122;AACV01018440.1/8398-8301 39947:Oryza sativa
Japonica Group
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 atattactccctccgttccaaaatgta 34
|||||||||||||||| ||||||||||
Sbjct: 98 atattactccctccgtcccaaaatgta 72
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 89 tatgtctagatacatagtaaaatatatgaatctagaaa 126
|||||||| |||||||||||||| ||| |||||||||
Sbjct: 71 tatgtctaaatacatagtaaaatcaatgcatctagaaa 108
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 12 tactccctccgttccaaaatgtaggtcgttttggctgttttagattcatagtgtttgcta 71
|||||||||||||||||| |||| | ||||||||| || ||||| ||| | ||| |||
Sbjct: 5 tactccctccgttccaaattgtaagatgttttggcttttctagatacattgcttttacta 64
Query: 72 tgcacataga 81
||||| ||||
Sbjct: 65 tgcacttaga 74
>RF00906;MIR1122;ABXC01004969.1/59800-59956 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 83 ataacatatgtctagatacatagtaaaatatatg 116
||||||||||||||||| ||||| ||||| ||||
Sbjct: 75 ataacatatgtctagattcatagcaaaatctatg 108
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 6e-04
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 12 tactccctccgttccaaaatgtaggtcgttttggctgttttagattcatagtgtttgcta 71
|||||||||| ||||||| |||| ||| |||||||| | ||| | ||||| |||||||
Sbjct: 112 tactccctccattccaaattgtaagtcattttggcttctctaggtacatagcttttgcta 53
Query: 72 tgcacataga 81
||||| ||||
Sbjct: 52 tgcacctaga 43
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 atattactccctccgttccaaa 29
||||||||||||||||||||||
Sbjct: 136 atattactccctccgttccaaa 115
>RF00906;MIR1122;AP008209.1/34447793-34447859 39947:Oryza sativa
Japonica Group
Length = 67
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 tattactccctccgttccaaaatgta 34
||||||| ||||||||||||||||||
Sbjct: 66 tattactacctccgttccaaaatgta 41
>RF00906;MIR1122;AACV01008227.1/1-122 39947:Oryza sativa Japonica
Group
Length = 122
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 attactccctccgttccaaaat 31
||||||||||||||||||||||
Sbjct: 1 attactccctccgttccaaaat 22
>RF00906;MIR1122;AAAA02026346.1/3509-3363 39946:Oryza sativa Indica
Group
Length = 147
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 attactccctccgttccaaaatgtag 35
|||||| |||||||||||||||||||
Sbjct: 145 attacttcctccgttccaaaatgtag 120
