miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 71.9 bits (36), Expect = 3e-12
Identities = 85/100 (85%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 65 tttgctatgcacctagagataacatatgtctagatacatagtaaaatatatgaatctaga 124
||||||||||||||||| | | |||||||||||||||||| ||||| |||||| | | |
Sbjct: 101 tttgctatgcacctagataaataatatgtctagatacatagcaaaatgtatgaa-ccaaa 43
Query: 125 aaagtcaaaacgacctacattttgaaaaggagggagtact 164
||| |||||||||| || | |||| || ||||||||||||
Sbjct: 42 aaactcaaaacgacttataatttggaacggagggagtact 3
>RF00906;MIR1122;ABXC01000115.1/34151-34263 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 65 tttgctatgcacctagagataacatatgtctagatacatagtaaaat 111
||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct: 35 tttgctatgtacctagatataacatatgtctagatacatagcaaaat 81
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 67.9 bits (34), Expect = 4e-11
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 49 ttttagattcatagtgtttgctatgcacctagagataacatatgtctagatacatagtaa 108
|||||||| |||||| |||||||||||| |||| ||| |||||||| || ||||||||
Sbjct: 118 ttttagatacatagtttttgctatgcacttagatatacactatgtctaaatgcatagtaa 59
Query: 109 aatatatgaatctagaaaagtcaaaa 134
|| ||| |||||||||||||||||
Sbjct: 58 aagcaatgtatctagaaaagtcaaaa 33
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 63.9 bits (32), Expect = 7e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 15 tccctccgttccaaaatgaaggtcgttttggctgttttagattcatag 62
|||||||||||||||||| | |||||||||||| |||||||| |||||
Sbjct: 145 tccctccgttccaaaatgcaagtcgttttggcttttttagatacatag 98
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 12 tactccctccgttccaaaatgaaggtcgttttggct 47
|||||||||||||||||| || | ||||||||||||
Sbjct: 5 tactccctccgttccaaattgtaagtcgttttggct 40
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 56.0 bits (28), Expect = 2e-07
Identities = 100/124 (80%)
Strand = Plus / Minus
Query: 12 tactccctccgttccaaaatgaaggtcgttttggctgttttagattcatagtgtttgcta 71
|||||||||||| ||||| | | | ||||||||| || ||||||||||| || |||
Sbjct: 152 tactccctccgtcccaaactataagacgttttggcatttctagattcatagctttgacta 93
Query: 72 tgcacctagagataacatatgtctagatacatagtaaaatatatgaatctagaaaagtca 131
|| | ||||| ||||||||| ||||||| |||| |||| ||||||| |||||||| ||
Sbjct: 92 tgaatctagacataacatatatctagatgcataccaaaagttatgaatatagaaaagcca 33
Query: 132 aaac 135
||||
Sbjct: 32 aaac 29
Score = 54.0 bits (27), Expect = 6e-07
Identities = 102/127 (80%)
Strand = Plus / Plus
Query: 39 gttttggctgttttagattcatagtgtttgctatgcacctagagataacatatgtctaga 98
||||||||| || || ||||||| |||| |||||| ||||| ||| ||||||||||
Sbjct: 29 gttttggcttttctatattcataacttttggtatgcatctagatatatgttatgtctaga 88
Query: 99 tacatagtaaaatatatgaatctagaaaagtcaaaacgacctacattttgaaaaggaggg 158
| |||||| ||| |||||||||||||| | ||||||| | || | |||| | ||||||
Sbjct: 89 ttcatagtcaaagctatgaatctagaaatgccaaaacgtcttatagtttgggacggaggg 148
Query: 159 agtacta 165
|||||||
Sbjct: 149 agtacta 155
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 90 atgtctagatacatagtaaaatatatgaatctagaaaag 128
||||||||||||||||||||| |||| |||||||||||
Sbjct: 69 atgtctagatacatagtaaaagctatgtatctagaaaag 107
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 91 tgtctagatacatagtaaaatatatgaatctagaaaagtcaaaacgacctacattttgaa 150
|||||||||||||||||||| | ||| |||||| |||| ||||||| | || | |||| |
Sbjct: 83 tgtctagatacatagtaaaaaaaatgtatctag-aaagccaaaacgtcttatagtttgga 141
Query: 151 aaggagggagtac 163
| |||||||||||
Sbjct: 142 acggagggagtac 154
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 1e-05
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 10 attactccctccgttccaaaatgaaggtcgttttggctgttttagattcatagtgtttgc 69
|||||||||||||||||||| | | | |||||||||| || ||||||||||| |||||
Sbjct: 113 attactccctccgttccaaattataagacgttttggct-ttctagattcatagcttttgc 55
Query: 70 tatgcacctagagataa 86
|| |||||||| ||||
Sbjct: 54 tacacacctagatataa 38
>RF00906;MIR1122;ABXC01004969.1/59800-59956 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 65 tttgctatgcacctagagataacatatgtctagatacatagtaaaatatatg 116
||||||||| | ||| | ||||||||||||||||| ||||| ||||| ||||
Sbjct: 57 tttgctatgtatctacatataacatatgtctagattcatagcaaaatctatg 108
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 89 tatgtctagatacatagtaaaatatatgaatctagaaaa 127
|||||||| |||||||||||||| ||| ||||||||||
Sbjct: 71 tatgtctaaatacatagtaaaatcaatgcatctagaaaa 109
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 6e-04
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 12 tactccctccgttccaaaatgaaggtcgttttggctgttttagattcatagtgtttgcta 71
|||||||||| ||||||| || | ||| |||||||| | ||| | ||||| |||||||
Sbjct: 112 tactccctccattccaaattgtaagtcattttggcttctctaggtacatagcttttgcta 53
Query: 72 tgcacctaga 81
||||||||||
Sbjct: 52 tgcacctaga 43
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 atattactccctccgttccaaa 29
||||||||||||||||||||||
Sbjct: 136 atattactccctccgttccaaa 115
>RF00906;MIR1122;AACV01008227.1/1-122 39947:Oryza sativa Japonica
Group
Length = 122
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 attactccctccgttccaaaat 31
||||||||||||||||||||||
Sbjct: 1 attactccctccgttccaaaat 22
