miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 139 bits (70), Expect = 2e-32
Identities = 106/118 (89%)
Strand = Plus / Minus
Query: 40 agccagcctttggtagccaaggatgacttgcttacatggccttgtgagtcccggttgcat 99
|||| |||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||
Sbjct: 119 agcctgcctttggtagccaaggatgacttgcctacatggcattgcgagttccggttgcat 60
Query: 100 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggcttttgcct 157
||| |||||||| || |||||||||||||||||||||| |||||||||| ||||||
Sbjct: 59 ggccagttcagctgagtttgtgggcggtcaccttggctagcctgagtggctcttgcct 2
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 139 bits (70), Expect = 2e-32
Identities = 106/118 (89%)
Strand = Plus / Minus
Query: 40 agccagcctttggtagccaaggatgacttgcttacatggccttgtgagtcccggttgcat 99
|||| |||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||
Sbjct: 119 agcctgcctttggtagccaaggatgacttgcctacacggccttgcgagttccggttgcat 60
Query: 100 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggcttttgcct 157
||| |||||| | ||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct: 59 ggccagttcagttgggtttgtgggcggtcaccttggctagcctgagtggctcttgcct 2
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 133 bits (67), Expect = 1e-30
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 40 agccagcctttggtagccaaggatgacttgcttacatggccttgtgagtcccggttgcat 99
|||| |||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||
Sbjct: 1 agcctgcctttggtagccaaggatgacttgcctacatggcattgcgagttccggttgcat 60
Query: 100 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggct 150
||| |||||||| || |||||||||||||||||||||| ||||||||||
Sbjct: 61 ggccagttcagctgagtttgtgggcggtcaccttggctagcctgagtggct 111
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 133 bits (67), Expect = 1e-30
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 40 agccagcctttggtagccaaggatgacttgcttacatggccttgtgagtcccggttgcat 99
|||| |||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||
Sbjct: 1 agcctgcctttggtagccaaggatgacttgcctacacggccttgcgagttccggttgcat 60
Query: 100 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggct 150
||| |||||| | ||| |||||||||||||||||||||| ||||||||||
Sbjct: 61 ggccagttcagttgggtttgtgggcggtcaccttggctagcctgagtggct 111
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 129 tttggtagccaaggatgacttgc 107
>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 121 tttggtagccaaggatgacttgc 99
>RF00865;MIR169_5;AY551202.1/194-30 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 151 tttggtagccaaggatgacttgc 129
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 153 tttggtagccaaggatgacttgc 131
>RF00865;MIR169_5;AY551200.1/193-29 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 151 tttggtagccaaggatgacttgc 129
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 129 tttggtagccaaggatgacttgc 107
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 119 tttggtagccaaggatgacttgc 97
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 126 tttggtagccaaggatgacttgc 104
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 125 tttggtagccaaggatgacttgc 103
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 118 tttggtagccaaggatgacttgc 96
>RF00865;MIR169_5;AASG02002697.1/24175-24333 3988:Ricinus communis
(castor bean)
Length = 159
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 144 tttggtagccaaggatgacttgc 122
>RF00865;MIR169_5;AASG02003632.1/18323-18451 3988:Ricinus communis
(castor bean)
Length = 129
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 113 tttggtagccaaggatgacttgc 91
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 113 tttggtagccaaggatgacttgc 91
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 137 tttggtagccaaggatgacttgc 115
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 40 agccagcctttggtagccaaggatgacttgc 70
|||| |||| |||||||||||||||||||||
Sbjct: 138 agcctgcctctggtagccaaggatgacttgc 108
>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
(papaya)
Length = 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgc 31
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgc 31
>RF00645;MIR169_2;AY551202.1/37-188 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgc 30
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 7 tttggtagccaaggatgacttgc 29
>RF00645;MIR169_2;AB016889.1/38604-38454 3702:Arabidopsis thaliana
(thale cress)
Length = 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 7 tttggtagccaaggatgacttgc 29
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 11 tttggtagccaaggatgacttgc 33
>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
trichocarpa
Length = 120
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgc 30
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgc 30
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgc 30
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgc 30
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgc 30
>RF00645;MIR169_2;AASG02003632.1/18444-18329 3988:Ricinus communis
(castor bean)
Length = 116
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 10 tttggtagccaaggatgacttgc 32
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 8 tttggtagccaaggatgacttgc 30
>RF00645;MIR169_2;AASG02002697.1/24326-24181 3988:Ricinus communis
(castor bean)
Length = 146
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttggtagccaaggatgacttgc 70
|||||||||||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgc 31
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 40 agccagcctttggtagccaaggatgacttgc 70
|||| |||| |||||||||||||||||||||
Sbjct: 1 agcctgcctctggtagccaaggatgacttgc 31
>RF00865;MIR169_5;ABXC01001464.1/182397-182247 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 130 ccttggctagtctgagtggctt 151
||||||||||||||||||||||
Sbjct: 29 ccttggctagtctgagtggctt 8
>RF00645;MIR169_2;ABXC01001464.1/182253-182392 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 130 ccttggctagtctgagtggctt 151
||||||||||||||||||||||
Sbjct: 117 ccttggctagtctgagtggctt 138
