miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 50.1 bits (25), Expect = 1e-05
Identities = 81/97 (83%), Gaps = 2/97 (2%)
Strand = Plus / Minus
Query: 38 ttttggcttttctaggttcatagatattattatgcatctagaca-aacactatatctaga 96
||||||| ||||||| ||||||| | | | |||| ||||||||| |||| ||||||||||
Sbjct: 124 ttttggcatttctagattcatagctttgactatgaatctagacataaca-tatatctaga 66
Query: 97 tgcatagtaaaaattatgtagctaaaaaagccaaaac 133
|||||| |||| ||||| | || ||||||||||||
Sbjct: 65 tgcataccaaaagttatgaatatagaaaagccaaaac 29
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 102 agtaaaaattatgtagctaaaaaagccaaaacga 135
||||||| |||||| ||||||||||||||||||
Sbjct: 90 agtaaaagctatgtatctaaaaaagccaaaacga 123
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 101 tagtaaaaattatgtagctaaaaaagccaaaacg 134
|||||||||| ||||| ||| |||||||||||||
Sbjct: 64 tagtaaaaataatgtatctagaaaagccaaaacg 31
>RF00906;MIR1122;EF059989.1/226094-226187 29664:Brachypodium
sylvaticum
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 151 tttggaacagagggagtactaa 172
||||||||||||||||||||||
Sbjct: 22 tttggaacagagggagtactaa 1
