miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 155 bits (78), Expect = 2e-37
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagct 81
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 1 ttgacagaagagagtgagcacacacggtggtttcttagcatgagtgccatgttgggagct 60
Query: 82 gtgcgtgctcactctctatctgtcag 107
||||||||||||||||||||||||||
Sbjct: 61 gtgcgtgctcactctctatctgtcag 86
>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica Group
Length = 88
Score = 127 bits (64), Expect = 4e-29
Identities = 82/87 (94%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttcttagcatg--agtgccatgctgggagc 80
||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacacggtgctttcttagcatgcaagagccatgctgggagc 61
Query: 81 tgtgcgtgctcactctctatctgtcag 107
|||||||||||||||||||||||||||
Sbjct: 62 tgtgcgtgctcactctctatctgtcag 88
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 79.8 bits (40), Expect = 8e-15
Identities = 75/84 (89%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctg 82
||||||||||||||||||||||||||| ||||| ||||| || ||||||| | ||||
Sbjct: 2 tgacagaagagagtgagcacacatggtctgttctt-gcatgggt-ccatgcttgaagctc 59
Query: 83 tgcgtgctcactctctatctgtca 106
||||||||||||||||||||||||
Sbjct: 60 tgcgtgctcactctctatctgtca 83
>RF00073;mir-156;AARH01003139.1/114039-113955 3694:Populus
trichocarpa
Length = 85
Score = 71.9 bits (36), Expect = 2e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctg 82
||||||||||||||||||||||| ||| |||||| |||||| ||||||| | | ||
Sbjct: 2 tgacagaagagagtgagcacacagggtactttctt-gcatgacatccatgcttgaaactt 60
Query: 83 tgcgtgctcactctctatctgtca 106
||||||||||||||||||||||||
Sbjct: 61 tgcgtgctcactctctatctgtca 84
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 69.9 bits (35), Expect = 8e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttctt 57
|||||||||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtggtttctt 36
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttctt 57
|||||||||||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgctttctt 36
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttct 56
|||||||||||||||||||||||||||| |||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgttttct 35
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtgg 51
|||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgg 30
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 56.0 bits (28), Expect = 1e-07
Identities = 72/84 (85%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttcttagcatgagtgccatgctgggagctg 82
||||||||||||||||||||||||||| |||| | |||||| | |||||| | |||
Sbjct: 2 tgacagaagagagtgagcacacatggtactttcct-gcatgaat-tcatgctcgaagcct 59
Query: 83 tgcgtgctcactctctatctgtca 106
|||||||| |||||||||||||||
Sbjct: 60 tgcgtgcttactctctatctgtca 83
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtg 50
||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtg 50
||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtg 29
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggt 49
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggt 49
|||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP009602.1/17046-16952 4081:Solanum lycopersicum
Length = 95
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 27 agaagagagtgagcacacatggtggtttctt 57
|||||||||||||||||||||||| ||||||
Sbjct: 6 agaagagagtgagcacacatggtgttttctt 36
>RF00073;mir-156;AC005917.3/7348-7264 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 gacagaagagagtgagcacacatgg 48
|||||||||||||||||||||||||
Sbjct: 3 gacagaagagagtgagcacacatgg 27
>RF00073;mir-156;AP003332.4/36088-35998 39947:Oryza sativa
Japonica Group
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttc 55
|||||||||||||||||||||| |||| |||||
Sbjct: 2 tgacagaagagagtgagcacacgtggttgtttc 34
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacaca 45
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacaca 24
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacaca 45
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacaca 24
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacaca 45
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 71/86 (82%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggtggtttcttagcatg--agtgccatgctgggagc 80
|||||||||||||||||||| ||||| | ||| | ||||| || ||||||| | |||
Sbjct: 2 tgacagaagagagtgagcacccatggcgtttttcttgcatggatgttccatgctcgaagc 61
Query: 81 tgtgcgtgctcactctctatctgtca 106
| ||||||||| |||||| |||||||
Sbjct: 62 tctgcgtgctctctctctctctgtca 87
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacaca 45
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacaca 45
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacaca 45
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacac 44
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacacatggt 49
||||||||||||||||||||| |||||
Sbjct: 2 tgacagaagagagtgagcacatatggt 28
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacaca 45
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacac 44
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacaca 45
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacac 44
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacaca 45
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcacac 44
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
Indica Group
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacaca 45
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
(papaya)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacac 44
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
(castor bean)
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacac 44
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
clover)
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcaca 43
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcaca 43
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtgagcaca 43
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01004344.1/59682-59592 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacac 44
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;ABXC01002848.1/26684-26598 4558:Sorghum bicolor
(sorghum)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacac 44
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AAAA02006911.1/103-14 39946:Oryza sativa Indica
Group
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacac 44
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>RF00073;mir-156;AP005286.3/98217-98130 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtgagcacac 44
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
