miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctagaatagatgtctcaaatttgttaaaatttggat 61
|||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggat 53
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 66 tgtctagattcatccaaattttaacaaatctaagacatct 105
|||||||||| ||||||||||| |||||| | ||||||||
Sbjct: 64 tgtctagatttatccaaattttgacaaatttgagacatct 25
>RF00906;MIR1122;EU730895.1/46100-45965 15368:Brachypodium
distachyon
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctagaatagatgtctcaaatttgttaaaatttggatg 62
|||||||||||||| | || ||||||||||| || || ||||||||||||
Sbjct: 5 tactccctccgtccaacaaaagatgtctcaagttcgtcaaaatttggatg 54
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctagaatagatgtctcaaatttgttaaaatttg 58
|||||||||||||| | || ||||||||||| ||||| ||||||||
Sbjct: 5 tactccctccgtccaacaaaagatgtctcaagtttgtcaaaatttg 50
>RF00906;MIR1122;EU730898.1/64006-63871 15368:Brachypodium
distachyon
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctagaatagatgtctcaaatttgttaaaatttggatg 62
|||||||||||||| | || |||||||||| ||| ||||||||||||||
Sbjct: 5 tactccctccgtccaacaaaagatgtctcaggtttattaaaatttggatg 54
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 105 taatttggaacggagggagtacatc 129
|||||||||||||||||||||||||
Sbjct: 134 taatttggaacggagggagtacatc 158
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 105 taatttggaacggagggagtacatc 129
|||||||||||||||||||||||||
Sbjct: 128 taatttggaacggagggagtacatc 152
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 89 acaaatctaagacatctaatttggaacggagggagta 125
|||||||||||||| ||||| |||||||||||||||
Sbjct: 41 acaaatctaagacaagtaattcggaacggagggagta 5
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 89 acaaatctaagacatctaatttggaacggagggagta 125
||||||| |||||| |||||||||||||||||||||
Sbjct: 95 acaaatccaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 89 acaaatctaagacatctaatttggaacggagggagta 125
||||||| |||||| |||||||||||||||||||||
Sbjct: 95 acaaatcgaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 101 catctaatttggaacggagggagta 125
|||||||||||||||||||||||||
Sbjct: 29 catctaatttggaacggagggagta 5
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 101 catctaatttggaacggagggagta 125
|||||||||||||||||||||||||
Sbjct: 107 catctaatttggaacggagggagta 131
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 101 catctaatttggaacggagggagtacat 128
|||||| |||||||||||||||||||||
Sbjct: 77 catctattttggaacggagggagtacat 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 101 catctaatttggaacggagggagtac 126
|||||| |||||||||||||||||||
Sbjct: 29 catctattttggaacggagggagtac 4
>RF00906;MIR1122;EU730894.1/75460-75595 15368:Brachypodium
distachyon
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 11 catactccctccgtcctagaatagatgtctcaaatttgttaaaatttg 58
|||||||||| ||||| | || ||||||||||| ||||| ||||||||
Sbjct: 3 catactcccttcgtccaacaaaagatgtctcaagtttgtcaaaatttg 50
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 67 gtctagattcatccaaattttaacaaatctaagacatctaatttggaacggagggagta 125
|||||||| |||||| |||| ||||||| ||||| || ||||||||||||||||||
Sbjct: 72 gtctagatacatccactttttggcaaatctgagacacttattttggaacggagggagta 130
>RF00906;MIR1122;FJ394373.1/383-480 4573:Aegilops speltoides
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 88 aacaaatctaagacatctaatttggaacgga 118
||||||||||||||| ||||||||| |||||
Sbjct: 42 aacaaatctaagacaactaatttgggacgga 12
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 88 aacaaatctaagacatctaatttggaacggagggagta 125
|||||||||||| || |||||| || ||||||||||||
Sbjct: 57 aacaaatctaaggcaactaattcgggacggagggagta 94
>RF00906;MIR1122;EF059989.1/67769-67635 29664:Brachypodium
sylvaticum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctagaatagatgtctcaaatttgttaaaat 55
|||||||||||||||| || |||||| ||||||| |||||||
Sbjct: 131 tactccctccgtcctaaaaaggatgtcgcaaattttttaaaat 89
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 taatttggaacggagggagtac 126
||||||||||||||||||||||
Sbjct: 124 taatttggaacggagggagtac 145
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 105 taatttggaacggagggagtac 126
||||||||||||||||||||||
Sbjct: 25 taatttggaacggagggagtac 4
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 taatttggaacggagggagtac 126
||||||||||||||||||||||
Sbjct: 91 taatttggaacggagggagtac 112
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 88 aacaaatctaagacatctaatttggaacggagggagta 125
||||||||||||||| | ||||||||||||||||||
Sbjct: 42 aacaaatctaagacaagaattttggaacggagggagta 5
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 101 catctaatttggaacggagggagtac 126
|||||| |||||||||||||||||||
Sbjct: 29 catctattttggaacggagggagtac 4
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctagaatagatgtctcaaatttgttaaaatttg 58
|||||||||||||| | || ||||||||||| ||| | ||||||||
Sbjct: 132 tactccctccgtccaacaaaagatgtctcaagtttatcaaaatttg 87
>RF00906;MIR1122;AL831805.4/14646-14723 4530:Oryza sativa (rice)
Length = 78
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctagaata 33
||||||||||||||||||||||
Sbjct: 4 atactccctccgtcctagaata 25
>RF00906;MIR1122;AP003246.3/163487-163335 39947:Oryza sativa
Japonica Group
Length = 153
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctagaata 33
||||||||||||||||||||||
Sbjct: 4 atactccctccgtcctagaata 25
