miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 60.0 bits (30), Expect = 2e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 10 tactactccctccgttccaaattataagac 39
||||||||||||||||||||||||||||||
Sbjct: 108 tactactccctccgttccaaattataagac 79
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 tactactccctccgttccaaattataagac 39
|||||||| |||||||||||||||||||||
Sbjct: 2 tactactctctccgttccaaattataagac 31
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagacat 41
|||||||||||||||||||||||||||||
Sbjct: 144 tactccctccgttccaaattataagacat 116
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 12 ctactccctccgttccaaattataagacatcctaaaaatcttg 54
|||||||||||||||||||||||||| ||| | || |||||||
Sbjct: 4 ctactccctccgttccaaattataagtcattccaataatcttg 46
Score = 50.1 bits (25), Expect = 2e-05
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 233 tacaagattgttggaatgtctaataattttaaacggagggagtag 277
||||||||| |||||||| || ||||||| ||||||||||||||
Sbjct: 48 tacaagattattggaatgacttataatttggaacggagggagtag 4
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 actactccctccgttccaaattataagacat 41
||||||||||||| |||||||||||||||||
Sbjct: 3 actactccctccggtccaaattataagacat 33
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagac 39
|||||||||||||||||| ||||||||
Sbjct: 153 tactccctccgttccaaactataagac 127
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 actactccctccgttccaaattataagacat 41
||||||||||| |||||||||||||||||||
Sbjct: 3 actactccctctgttccaaattataagacat 33
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagac 39
|||||||||||||||||||||||||||
Sbjct: 111 tactccctccgttccaaattataagac 85
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgttccaaattataag 37
||||||||||||||||||||||||||
Sbjct: 4 ctactccctccgttccaaattataag 29
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattataagacat 41
||||||||||| ||||||||||||||||||
Sbjct: 150 ctactccctccattccaaattataagacat 121
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagacat 41
||||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgctccaaattataagacat 33
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattataag 37
||||||||||||||||||||||||||
Sbjct: 155 ctactccctccgttccaaattataag 130
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattataag 37
||||||||||||||||||||||||||
Sbjct: 155 ctactccctccgttccaaattataag 130
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataag 29
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 154 tactccctccgttccaaattataag 130
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataag 29
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataag 29
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 148 tactccctccgttccaaattataag 124
>RF00906;MIR1122;ABXC01000332.1/159241-159126 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagacat 41
|||||||||| ||||||||||||||||||
Sbjct: 112 tactccctccattccaaattataagacat 84
>RF00906;MIR1122;ABXC01004969.1/59800-59956 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 atactactccctccgttccaaattataag 37
||||||||||||| |||||||||||||||
Sbjct: 157 atactactccctcagttccaaattataag 129
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaattataag 29
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 atactactccctccgttccaaatta 33
|||||||||||||||||||||||||
Sbjct: 1 atactactccctccgttccaaatta 25
>RF00906;MIR1122;ABRL01002327.1/13187-13322 65489:Oryza barthii
Length = 136
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 ctactccctccgttccaaattataagac 39
|||||||||||||| |||||||||||||
Sbjct: 133 ctactccctccgtttcaaattataagac 106
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 actactccctccgttccaaattataag 37
|||||||||||||||||||| ||||||
Sbjct: 3 actactccctccgttccaaaatataag 29
>RF00906;MIR1122;ABXC01001787.1/79252-79126 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagac 39
||||||||| |||||||||||||||||
Sbjct: 5 tactccctctgttccaaattataagac 31
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 ctactccctccgttccaaattataaga 38
||||||||||||||||||||| |||||
Sbjct: 4 ctactccctccgttccaaattgtaaga 30
>RF00906;MIR1122;ABXC01000255.1/62068-61965 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagac 39
|||||||||| ||||||||||||||||
Sbjct: 5 tactccctccattccaaattataagac 31
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgttccaaattataagac 39
|||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgttccacattataagac 31
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagac 39
|||||||||| ||||||||||||||||
Sbjct: 158 tactccctccattccaaattataagac 132
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 actactccctccgttccaaattataag 37
|||||||||||||||||||||| ||||
Sbjct: 3 actactccctccgttccaaattgtaag 29
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagac 39
|||||||||||||||||| ||||||||
Sbjct: 163 tactccctccgttccaaaatataagac 137
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgttccaaattataagac 39
|||||||||||||||||| ||||||||
Sbjct: 166 tactccctccgttccaaaatataagac 140
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 9 atactactccctccgttccaaattataagac 39
||||||||||||||||||| || ||||||||
Sbjct: 167 atactactccctccgttcctaaatataagac 137
>RF00906;MIR1122;AAAA02003905.1/26512-26644 39946:Oryza sativa
Indica Group
Length = 133
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 atactactccctccgttccaaattata 35
|||||||||||||||||||||| ||||
Sbjct: 1 atactactccctccgttccaaaatata 27
