miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 135 bits (68), Expect = 1e-31
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 2 aagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 159
Query: 62 cctttgcc 69
||||||||
Sbjct: 160 cctttgcc 167
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 115 bits (58), Expect = 1e-25
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 2 aagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 109 bits (55), Expect = 6e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 7 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcccttt 66
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 111 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcccttt 170
Query: 67 gcc 69
|||
Sbjct: 171 gcc 173
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 93.7 bits (47), Expect = 4e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 19 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 69
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 93.7 bits (47), Expect = 4e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 19 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 69
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 19 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 59
||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 89.7 bits (45), Expect = 6e-18
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 18 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 62
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 85.7 bits (43), Expect = 9e-17
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 19 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 69
||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 73.8 bits (37), Expect = 3e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 25 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 69
||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 73.8 bits (37), Expect = 3e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 21 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 69
||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 69.9 bits (35), Expect = 5e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 20 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 62
|||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 46.1 bits (23), Expect = 7e-05
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 9 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 59
|||||||| ||||||||||||| ||||||| ||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
