miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 184 bits (93), Expect = 2e-46
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 35 actgcattacttgcaaggaagtcacaaaatcaattggaagatcatacttgtggctttctt 94
||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122
Query: 95 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 139
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
Score = 83.8 bits (42), Expect = 6e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 4 tgcatgtggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 61
||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 1 tgcatatggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 119 bits (60), Expect = 1e-26
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 62 aatcaattggaagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagc 121
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aatccattgcaagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagc 221
Query: 122 ttgctgcc 129
||||||||
Sbjct: 222 ttgctgcc 229
Score = 87.7 bits (44), Expect = 4e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 61
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 109 bits (55), Expect = 1e-23
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 77 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcccttt 136
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 111 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcccttt 170
Query: 137 gcc 139
|||
Sbjct: 171 gcc 173
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 5 gcatgtggtggcaccaagcatgaggcaggaactgcattacttg 47
|||||||| |||||||||||||||||| ||||||| ||||||
Sbjct: 2 gcatgtggcggcaccaagcatgaggcaacaactgcagtacttg 44
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 99.6 bits (50), Expect = 1e-20
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 4 tgcatgtggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 61
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 79 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 129
|||||||| ||||||||||||| ||||||| ||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 93.7 bits (47), Expect = 6e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 89 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 139
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 93.7 bits (47), Expect = 6e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 89 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 139
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 89 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 129
||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 89.7 bits (45), Expect = 9e-18
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 88 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 132
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 60.0 bits (30), Expect = 8e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 4 tgcatgtggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 61
||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaagggaatcacaa 58
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 85.7 bits (43), Expect = 1e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 89 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 139
||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 95 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 139
||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 91 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 139
||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 90 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 132
|||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
