miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 135 bits (68), Expect = 2e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 53 tcacaaaatcaattggaagatcatacttgtggctttcttgcaagttgtgcagttgttgcc 112
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tcacaaaatccattgcaagatcatacttgtggctttcttgcaagttgtgcagttgttgcc 143
Query: 113 tcaagcttgctgcctc 128
||||||||||||||||
Sbjct: 144 tcaagcttgctgcctc 159
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 51
||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 8 ggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 119 bits (60), Expect = 9e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 59 aatcaattggaagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagc 118
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aatccattgcaagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagc 221
Query: 119 ttgctgcc 126
||||||||
Sbjct: 222 ttgctgcc 229
Score = 87.7 bits (44), Expect = 3e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 51
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 93.7 bits (47), Expect = 5e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 51
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 76 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 126
|||||||| ||||||||||||| ||||||| ||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 93.7 bits (47), Expect = 5e-19
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 74 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 128
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 111 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctc 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttg 37
|||||||||||||||||| ||||||| ||||||
Sbjct: 11 ggcaccaagcatgaggcaacaactgcagtacttg 44
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 87.7 bits (44), Expect = 3e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 85 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 128
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 157
Score = 60.0 bits (30), Expect = 8e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaactcacaa 58
||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||
Sbjct: 8 ggtggcaccaagcatgaggttacaactgcattacttgcaagggaatcacaagtcacaa 65
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 86 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 128
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 86 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 128
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 122
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 86 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 126
||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 86 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 128
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctc 120
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 87 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 128
|||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctc 121
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 92 gcaagttgtgcagttgttgcctcaagcttgctgcctc 128
||||||| |||||||| ||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctc 126
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 88 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 128
||||||||||| |||||||| |||||||||||| |||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctc 121
