miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 186 bits (94), Expect = 4e-47
Identities = 109/114 (95%)
Strand = Plus / Plus
Query: 2 ggcggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttcagacca 61
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8 ggcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaacca 67
Query: 62 tacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 taccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 155 bits (78), Expect = 2e-37
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 10 caagctagaggcagcaactgcatatcttgcaagaaaattggttttcagaccatacctatg 69
|||||||||| ||||||||||||||||||||||||||| |||||| | ||||||| |||
Sbjct: 16 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 75
Query: 70 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 76 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 121
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 69 gattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 54 gattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 121 bits (61), Expect = 2e-27
Identities = 97/108 (89%), Gaps = 2/108 (1%)
Strand = Plus / Plus
Query: 10 caagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcagaccataccta 67
|||||||||||||||||||||||| |||||||||||| | |||||| | |||| |
Sbjct: 16 caagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccga 75
Query: 68 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 71 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 112
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 85.7 bits (43), Expect = 1e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 65 ctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 108 ctatgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 79.8 bits (40), Expect = 7e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 160
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 112
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 60 catacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||| ||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 10 caagctagaggcagcaactgcatatcttgcaagaa 44
|||||| ||||||||||||||||| ||||||||||
Sbjct: 114 caagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 166
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 78 gcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctcc 127
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 caagctagaggcagcaactgcatatcttgc 39
|||||| ||||||||||||||||| |||||
Sbjct: 119 caagcttgaggcagcaactgcataacttgc 90
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 74 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
||||||||||| |||||||| || ||||||||| ||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 122
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 11 aagctagaggcagcaactgcatatcttgcaaga 43
||||| ||||||||||||||||| |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaaga 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 86 tgcagttgttgtctcaagcttgctgcc 112
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
