miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 188 bits (95), Expect = 1e-47
Identities = 119/127 (93%)
Strand = Plus / Plus
Query: 1 tgcaaggggtggtgacaagctagaggcagcagctgcatatcctgcaagaaaattggtttt 60
||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 1 tgcaaggggcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggtttt 60
Query: 61 cagaccatacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
Query: 121 cctttgc 127
|||||||
Sbjct: 121 cctttgc 127
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 151 bits (76), Expect = 3e-36
Identities = 103/112 (91%)
Strand = Plus / Plus
Query: 16 caagctagaggcagcagctgcatatcctgcaagaaaattggttttcagaccatacctatg 75
|||||||||| ||||| ||||||||| ||||||||||| |||||| | ||||||| |||
Sbjct: 16 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 75
Query: 76 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 76 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgc 127
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 75 gattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
|||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 54 gattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 117 bits (59), Expect = 4e-26
Identities = 101/114 (88%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 16 caagctagaggcagcagctgcatatcctgcaagaaaa--ttggttttcagaccataccta 73
|||||||||||||||| ||||||| | |||||||||| | |||||| | |||| |
Sbjct: 16 caagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccga 75
Query: 74 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 77 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 118
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgc 166
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 85.7 bits (43), Expect = 1e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 71 ctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
|||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 108 ctatgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
|||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgc 172
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 118
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 66 catacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
|||||| ||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 84 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgc 133
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 63.9 bits (32), Expect = 5e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 80 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
||||||||||| |||||||| || ||||||||| ||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgc 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 tgcagttgttgtctcaagcttgctgcc 118
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
