miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 141 bits (71), Expect = 5e-33
Identities = 81/83 (97%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 154 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 213
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgtccccttgctggccgct 210
Query: 214 ctttggattgaagggagctctgc 236
|||||||||||||||||||||||
Sbjct: 211 ctttggattgaagggagctctgc 233
Score = 91.7 bits (46), Expect = 4e-18
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 5 gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 64
|||||| ||||||||||||||||||||| |||||||| |||| |||| | ||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcg 65
Query: 65 ttcatggttcccactagtcctatctcatca 94
|||||||||||||||| |||||||||||||
Sbjct: 66 ttcatggttcccacta-tcctatctcatca 94
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 133 bits (67), Expect = 1e-30
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 154 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 213
||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 141 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgcccccttgctggccgct 199
Query: 214 ctttggattgaagggagctctgc 236
|||||||||||||||||||||||
Sbjct: 200 ctttggattgaagggagctctgc 222
Score = 75.8 bits (38), Expect = 3e-13
Identities = 78/90 (86%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 5 gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 64
|||||||||||||||||||||||||||| || | | || ||| ||| | ||||||||
Sbjct: 7 gaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgctcg 66
Query: 65 ttcatggttcccactagtcctatctcatca 94
|||||||||||||||| |||||||||||||
Sbjct: 67 ttcatggttcccacta-tcctatctcatca 95
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 87.7 bits (44), Expect = 7e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 167 tgtggcttgcatgaccgaggagctgcaccgtcccc-ttgctggccgctctttggattgaa 225
||||| ||||||||||||||||||||| ||||||| ||| | |||||| ||||||||||
Sbjct: 147 tgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcgttggattgaa 206
Query: 226 gggagctctgcgtctt 241
||||||||||||||||
Sbjct: 207 gggagctctgcgtctt 222
Score = 54.0 bits (27), Expect = 9e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 56 agctgctcgttcatggttcccactagtcctatctcatca 94
||||||||||||||||||||||||| ||| |||||||||
Sbjct: 57 agctgctcgttcatggttcccacta-tcccatctcatca 94
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 79.8 bits (40), Expect = 2e-14
Identities = 81/92 (88%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 152 gcttgagataggctttgtggcttgcatgaccgaggagctgcaccgtcccctt-gctggcc 210
||||||||| ||||| |||| |||||||||||||||||||| ||||||||| | || ||
Sbjct: 127 gcttgagatgggctt-gtggtttgcatgaccgaggagctgcctcgtccccttcgttgacc 185
Query: 211 gctctttggattgaagggagctctgcgtcttg 242
||| |||||| ||||||||||||||| |||||
Sbjct: 186 gctgtttggagtgaagggagctctgcatcttg 217
Score = 65.9 bits (33), Expect = 2e-10
Identities = 43/45 (95%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 50 tggtacagctgctcgttcatggttcccactagtcctatctcatca 94
|||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 51 tggtacagctgctcgttcatggttcccact-gtcccatctcatca 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 69.9 bits (35), Expect = 2e-11
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 156 gagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctct 215
||||||||||| |||| |||||||||| |||||| | | | | |||||||| || ||||
Sbjct: 97 gagataggctt-gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactct 155
Query: 216 ttggattgaagggagctctgcgtcttg 242
||||||||||||||||||||| |||||
Sbjct: 156 ttggattgaagggagctctgcatcttg 182
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 tacagctgctcgttcatggttcccacta 80
|||||||||| |||||||||||||||||
Sbjct: 51 tacagctgcttgttcatggttcccacta 78
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 212 ctctttggattgaagggagctctgcgtctt 241
||||||||||||||||||||||||| ||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 213 tctttggattgaagggagctct 234
||||||||||||||||||||||
Sbjct: 174 tctttggattgaagggagctct 195
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 213 tctttggattgaagggagctct 234
||||||||||||||||||||||
Sbjct: 170 tctttggattgaagggagctct 191
