miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 113 bits (57), Expect = 1e-24
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 155 ttgagataggcttgtggtttgcatggccgaggagctgcatcgtcccctctccgaccgctg 214
||||||||||||||||||||||||| ||||||||||||| |||||||| | | |||||
Sbjct: 152 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctc 211
Query: 215 tttggattgaagggagctctgcatc 239
|||||||||||||||||||||||||
Sbjct: 212 tttggattgaagggagctctgcatc 236
Score = 81.8 bits (41), Expect = 4e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 36 ttccaatgaagggtcgttctgaagggtggtacagctgctcgttcatggttcccactatcc 95
||||||||||||| | || | | ||||||| | |||||||||||||||||||||||||||
Sbjct: 25 ttccaatgaagggcccttttcatgggtggttccgctgctcgttcatggttcccactatcc 84
Query: 96 tatctcatc 104
|||||||||
Sbjct: 85 tatctcatc 93
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 105 bits (53), Expect = 3e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 155 ttgagataggcttgtggtttgcatggccgaggagctgcatcgtcccctctccgaccgctg 214
||||||||||||||||||||||||| ||||||||||||| || ||||| | | |||||
Sbjct: 141 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctc 200
Query: 215 tttggattgaagggagctctgcatc 239
|||||||||||||||||||||||||
Sbjct: 201 tttggattgaagggagctctgcatc 225
Score = 93.7 bits (47), Expect = 1e-18
Identities = 81/91 (89%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 15 tttgaagcggagctctcttccttccaatgaagggtcgttctgaagggt-ggtacagctgc 73
||||||||||||||| || ||||||||||||||||| | |||||| ||| | |||||
Sbjct: 4 tttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgc 63
Query: 74 tcgttcatggttcccactatcctatctcatc 104
|||||||||||||||||||||||||||||||
Sbjct: 64 tcgttcatggttcccactatcctatctcatc 94
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 105 bits (53), Expect = 3e-22
Identities = 81/89 (91%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 153 gcttgagataggcttgtggtttgcatggccgaggagctgcatcgtcccc-tctccgaccg 211
||||||||| ||||||||||||||||| |||||||||||| |||||||| || |||||
Sbjct: 127 gcttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccg 186
Query: 212 ctgtttggattgaagggagctctgcatct 240
||||||||| |||||||||||||||||||
Sbjct: 187 ctgtttggagtgaagggagctctgcatct 215
Score = 85.7 bits (43), Expect = 3e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 38 ccaatgaagggtcgttctgaagggtggtacagctgctcgttcatggttcccactatccta 97
||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct: 27 ccaataaacggtcgatctgatgggtggtacagctgctcgttcatggttcccactgtccca 86
Query: 98 tctcatc 104
|||||||
Sbjct: 87 tctcatc 93
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 97.6 bits (49), Expect = 7e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 153 gcttgagataggcttgtggtttgcatggccgaggagctgcatcgtcccctct-ccgaccg 211
||||||||| ||| ||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 133 gcttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccg 192
Query: 212 ctgtttggattgaagggagctctgc 236
|| |||||||||||||||||||||
Sbjct: 193 ctcgttggattgaagggagctctgc 217
Score = 67.9 bits (34), Expect = 7e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 55 tgaagggtggtacagctgctcgttcatggttcccactatcctatctcatc 104
||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct: 44 tgaagggtgatcgagctgctcgttcatggttcccactatcccatctcatc 93
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 77.8 bits (39), Expect = 7e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 53 tctgaagggtggtacagctgctcgttcatggttcccactatcctatctcat 103
||||||||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct: 39 tctgaagggtgatacagctgcttgttcatggttcccactattctatctcat 89
Score = 75.8 bits (38), Expect = 3e-13
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 157 gagataggcttgtggtttgcatggccgaggagctgcatcgtcccctctccgaccgctgtt 216
||||||||||||||||||||||| || |||||| | ||| | ||| | |||| || ||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 217 tggattgaagggagctctgcatctcgatcc 246
|||||||||||||||||||||||| |||||
Sbjct: 157 tggattgaagggagctctgcatcttgatcc 186
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 215 tttggattgaagggagctctgcatct 240
||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatct 267
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 213 tgtttggattgaagggagctctgcatctc 241
|||||||||||||||||||||| ||||||
Sbjct: 160 tgtttggattgaagggagctctacatctc 188
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 215 tttggattgaagggagctctgcatctc 241
|||||||||||||||||||| ||||||
Sbjct: 176 tttggattgaagggagctcttcatctc 202
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 213 tgtttggattgaagggagctct 234
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 215 tttggattgaagggagctctgcatct 240
|||||||||||||||||||| |||||
Sbjct: 172 tttggattgaagggagctctacatct 197
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 213 tgtttggattgaagggagctct 234
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
