miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 33 tactccctccgtctcaaaattgatgtcgcagatttgtcaaaatttggatgaatcta 88
||||||||||||| | || |||||| || |||||||||||||||||| ||||||
Sbjct: 5 tactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggataaatcta 60
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 32 gtactccctccgtctcaaaattgatgtcgcagatttgtcaaaatttggatg 82
|||||||||||||| |||||||| |||| | ||||||| |||| ||||||
Sbjct: 4 gtactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatg 54
>RF00906;MIR1122;AAAA02006966.1/10750-10616 39946:Oryza sativa
Indica Group
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 aacgtactccctccgtctcaaaa 51
|||||||||||||||||||||||
Sbjct: 1 aacgtactccctccgtctcaaaa 23
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 gtactccctccgtctcaaaatt 53
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaatt 25
