miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 133 bits (67), Expect = 1e-30
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 146 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgttcccttgctggccgct 205
||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 152 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgtccccttgctggccgct 210
Query: 206 ctttggattgaagggagctctgc 228
|||||||||||||||||||||||
Sbjct: 211 ctttggattgaagggagctctgc 233
Score = 103 bits (52), Expect = 1e-21
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 3 gaagcggagctcctatcattccaatgaagggtcctttcgctgggttggtacagctgctcg 62
|||||| |||||||||||||||||||||||| ||||| ||||| ||| | ||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttcatgggt-ggttccgctgctcg 65
Query: 63 ttcatggttcccactatcctatctcatc 90
||||||||||||||||||||||||||||
Sbjct: 66 ttcatggttcccactatcctatctcatc 93
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 125 bits (63), Expect = 3e-28
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 146 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgttcccttgctggccgct 205
||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 141 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgcccccttgctggccgct 199
Query: 206 ctttggattgaagggagctctgc 228
|||||||||||||||||||||||
Sbjct: 200 ctttggattgaagggagctctgc 222
Score = 103 bits (52), Expect = 1e-21
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 3 gaagcggagctcctatcattccaatgaagggtcctttcgctgggttggtacagctgctcg 62
||||||||||||||||||||||||||||||||| | || ||| ||| | ||||||||
Sbjct: 7 gaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgctcg 66
Query: 63 ttcatggttcccactatcctatctcatc 90
||||||||||||||||||||||||||||
Sbjct: 67 ttcatggttcccactatcctatctcatc 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 77.8 bits (39), Expect = 6e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 159 tgtggcttgcatgaccgaggagctgcaccgttcccttgctgg-ccgctctttggattgaa 217
||||| ||||||||||||||||||||| ||| ||||| | | |||||| ||||||||||
Sbjct: 147 tgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcgttggattgaa 206
Query: 218 gggagctctgcgtct 232
|||||||||||||||
Sbjct: 207 gggagctctgcgtct 221
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 54 agctgctcgttcatggttcccactatcctatctcatc 90
|||||||||||||||||||||||||||| ||||||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctcatc 93
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 48 tggtacagctgctcgttcatggttcccactatcctatctcatc 90
|||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 51 tggtacagctgctcgttcatggttcccactgtcccatctcatc 93
Score = 67.9 bits (34), Expect = 6e-11
Identities = 75/86 (87%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 144 gcttgagataggctttgtggcttgcatgaccgaggagctgcaccgttccctt-gctggcc 202
||||||||| ||||| |||| |||||||||||||||||||| ||| ||||| | || ||
Sbjct: 127 gcttgagatgggctt-gtggtttgcatgaccgaggagctgcctcgtccccttcgttgacc 185
Query: 203 gctctttggattgaagggagctctgc 228
||| |||||| |||||||||||||||
Sbjct: 186 gctgtttggagtgaagggagctctgc 211
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica
Group
Length = 187
Score = 61.9 bits (31), Expect = 4e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 51 tacagctgctcgttcatggttcccactatcctatctcat 89
|||||||||| |||||||||||||||||| |||||||||
Sbjct: 51 tacagctgcttgttcatggttcccactattctatctcat 89
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 192 ccttgctggccgctctttggattgaagggagctctgc 228
|||||||| || |||||||||||||||||||||||||
Sbjct: 140 ccttgctgaccactctttggattgaagggagctctgc 176
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 204 ctctttggattgaagggagctctgc 228
|||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgc 263
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 205 tctttggattgaagggagctct 226
||||||||||||||||||||||
Sbjct: 174 tctttggattgaagggagctct 195
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 205 tctttggattgaagggagctct 226
||||||||||||||||||||||
Sbjct: 170 tctttggattgaagggagctct 191
