miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 139 bits (70), Expect = 2e-32
Identities = 106/118 (89%)
Strand = Plus / Minus
Query: 49 agccagcctttggtagtcaaggatgacttgcctacatggccttgtgagtcccggttgcat 108
|||| ||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct: 119 agcctgcctttggtagccaaggatgacttgcctacatggcattgcgagttccggttgcat 60
Query: 109 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggcttttgcct 166
||| |||||||| || |||||||||||||||||||||| |||||||||| ||||||
Sbjct: 59 ggccagttcagctgagtttgtgggcggtcaccttggctagcctgagtggctcttgcct 2
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 139 bits (70), Expect = 2e-32
Identities = 106/118 (89%)
Strand = Plus / Minus
Query: 49 agccagcctttggtagtcaaggatgacttgcctacatggccttgtgagtcccggttgcat 108
|||| ||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct: 119 agcctgcctttggtagccaaggatgacttgcctacacggccttgcgagttccggttgcat 60
Query: 109 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggcttttgcct 166
||| |||||| | ||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct: 59 ggccagttcagttgggtttgtgggcggtcaccttggctagcctgagtggctcttgcct 2
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 133 bits (67), Expect = 1e-30
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 49 agccagcctttggtagtcaaggatgacttgcctacatggccttgtgagtcccggttgcat 108
|||| ||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct: 1 agcctgcctttggtagccaaggatgacttgcctacatggcattgcgagttccggttgcat 60
Query: 109 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggct 159
||| |||||||| || |||||||||||||||||||||| ||||||||||
Sbjct: 61 ggccagttcagctgagtttgtgggcggtcaccttggctagcctgagtggct 111
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 133 bits (67), Expect = 1e-30
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 49 agccagcctttggtagtcaaggatgacttgcctacatggccttgtgagtcccggttgcat 108
|||| ||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct: 1 agcctgcctttggtagccaaggatgacttgcctacacggccttgcgagttccggttgcat 60
Query: 109 agccggttcagctaggtctgtgggcggtcaccttggctagtctgagtggct 159
||| |||||| | ||| |||||||||||||||||||||| ||||||||||
Sbjct: 61 ggccagttcagttgggtttgtgggcggtcaccttggctagcctgagtggct 111
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 tttggtagtcaaggatgacttgccta 82
|||||||| |||||||||||||||||
Sbjct: 129 tttggtagccaaggatgacttgccta 104
>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
(papaya)
Length = 138
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 57 tttggtagtcaaggatgacttgcctacatg 86
|||||||| |||||||||||||||| ||||
Sbjct: 121 tttggtagccaaggatgacttgcctgcatg 92
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 tttggtagtcaaggatgacttgccta 82
|||||||| |||||||||||||||||
Sbjct: 126 tttggtagccaaggatgacttgccta 101
>RF00865;MIR169_5;ABXC01001464.1/182397-182247 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 139 ccttggctagtctgagtggctt 160
||||||||||||||||||||||
Sbjct: 29 ccttggctagtctgagtggctt 8
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 49 agccagcctttggtagtcaaggatgacttgccta 82
|||| |||| |||||| |||||||||||||||||
Sbjct: 138 agcctgcctctggtagccaaggatgacttgccta 105
>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
(papaya)
Length = 123
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 tttggtagtcaaggatgacttgcctacatg 86
|||||||| |||||||||||||||| ||||
Sbjct: 9 tttggtagccaaggatgacttgcctgcatg 38
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tttggtagtcaaggatgacttgccta 82
|||||||| |||||||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgccta 34
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 tttggtagtcaaggatgacttgccta 82
|||||||| |||||||||||||||||
Sbjct: 11 tttggtagccaaggatgacttgccta 36
>RF00645;MIR169_2;ABXC01001464.1/182253-182392 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ccttggctagtctgagtggctt 160
||||||||||||||||||||||
Sbjct: 117 ccttggctagtctgagtggctt 138
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 49 agccagcctttggtagtcaaggatgacttgccta 82
|||| |||| |||||| |||||||||||||||||
Sbjct: 1 agcctgcctctggtagccaaggatgacttgccta 34
