miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 127 bits (64), Expect = 9e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 169 ctttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgc 228
||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 150 ctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgc 209
Query: 229 tctttggattgaaggaagctctgc 252
||||||||||||||| ||||||||
Sbjct: 210 tctttggattgaagggagctctgc 233
Score = 73.8 bits (37), Expect = 1e-12
Identities = 77/89 (86%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 17 gaagcggagctcctatctctccaatgaagggtcgttttgatcgggtggtacagctgctcg 76
|||||| |||||||||| |||||||||||| | |||| || ||||||| | ||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttcat-gggtggttccgctgctcg 65
Query: 77 ttcatggttaccactgacctatctcatca 105
||||||||| ||||| ||||||||||||
Sbjct: 66 ttcatggttcccactatcctatctcatca 94
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 119 bits (60), Expect = 2e-26
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 169 ctttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgc 228
||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 139 ctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgc 198
Query: 229 tctttggattgaaggaagctctgc 252
||||||||||||||| ||||||||
Sbjct: 199 tctttggattgaagggagctctgc 222
Score = 65.9 bits (33), Expect = 3e-10
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 17 gaagcggagctcctatctctccaatgaagggtcgttttgatcgggtggtacagctgctcg 76
||||||||||||||||| |||||||||||||||| || || ||| | ||||||||
Sbjct: 7 gaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgctcg 66
Query: 77 ttcatggttaccactgacctatctcatca 105
||||||||| ||||| ||||||||||||
Sbjct: 67 ttcatggttcccactatcctatctcatca 95
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 69.9 bits (35), Expect = 2e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 59 gggtggtacagctgctcgttcatggttaccactgacctatctcatca 105
||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct: 48 gggtggtacagctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 69.9 bits (35), Expect = 2e-11
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 173 gagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgctctt 232
||||||||||||||| ||||||||| |||| | | | || | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 233 tggattgaaggaagctctgcgtctcgatccc 263
||||||||||| |||||||| ||| ||||||
Sbjct: 157 tggattgaagggagctctgcatcttgatccc 187
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 61.9 bits (31), Expect = 4e-09
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 171 ttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctgg-ccgct 229
||||||| ||| ||||| ||||||||| ||||| ||||| | ||||||| | | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 230 ctttggattgaaggaagctctgcgtct 256
| |||||||||||| ||||||||||||
Sbjct: 195 cgttggattgaagggagctctgcgtct 221
