miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 aaatgcacttattttggaacagagggagtac 31
||||||||||||||||| || ||||||||||
Sbjct: 31 aaatgcacttattttgggacggagggagtac 1
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 ttattttggaacagagggagtac 31
|||||||||||||||||||||||
Sbjct: 26 ttattttggaacagagggagtac 4
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 tgcacttattttggaacagagggagta 30
||||||||||||||||| |||||||||
Sbjct: 59 tgcacttattttggaacggagggagta 85
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 cacttattttggaacagagggagtac 31
|||||||||||| |||||||||||||
Sbjct: 40 cacttattttgggacagagggagtac 65
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 cacttattttggaacagagggagtac 31
||||||||||||||||||| ||||||
Sbjct: 29 cacttattttggaacagagagagtac 4
