miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 140 agtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactg 199
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 200 aagggagctccctt 213
Score = 69.9 bits (35), Expect = 1e-11
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 8 aagagagctttcttcggtccactcacgggttacgataagatatcaattagctgccgactc 67
||||||||||||||| ||||||||| |||| || || ||| | ||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgactc 67
Query: 68 attcacccaaatact 82
||||| |||||||||
Sbjct: 68 attcatccaaatact 82
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 100 agtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactg 159
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 160 aagggagctccctt 173
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 101 bits (51), Expect = 3e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 111 aaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactgaag 170
|||||| ||||||||||||||||||||||| ||||||||| |||| || |||||||||||
Sbjct: 114 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 173
Query: 171 ggagctccctt 181
|||||||||||
Sbjct: 174 ggagctccctt 184
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 99.6 bits (50), Expect = 1e-20
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||||||
Sbjct: 107 agtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggactg 166
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 167 aagggagctccctt 180
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 97.6 bits (49), Expect = 5e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 95 agtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggactg 154
Query: 168 aagggagctccct 180
|||||||||||||
Sbjct: 155 aagggagctccct 167
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 67.9 bits (34), Expect = 5e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||| |||||||||||||||||| ||||||| |||| | ||||||||
Sbjct: 105 agtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactg 164
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 165 aagggagctccctt 178
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 110 taaatgattgaatgatgcgggagacaaattggatc 144
||||||| |||||||||||| ||||||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattggatc 147
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 caattagctgccgactcattcacccaaatac 81
||||||||| |||||||||||| ||||||||
Sbjct: 51 caattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 110 taaatgattgaatgatgcgggagacaaattggatc 144
||||||| |||||||||||| ||||||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatc 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 caattagctgccgactcattcacccaaatac 81
||||||||| |||||||||||| ||||||||
Sbjct: 51 caattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 110 taaatgattgaatgatgcgggagacaaattggatc 144
||||||| |||||||||||| ||||||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatc 145
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 tcaattagctgccgactcattcacccaaatac 81
|||||||||| |||||||||||| ||||||||
Sbjct: 50 tcaattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 aagagagctttcttcggtccactca 32
|||||||||||||||||||||||||
Sbjct: 9 aagagagctttcttcggtccactca 33
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gtaaatgattgaatgatgcgggagacaaattg 140
|||||||| ||||||||||| |||||||||||
Sbjct: 110 gtaaatgaatgaatgatgcgagagacaaattg 141
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcaccca 76
|||||||||||||||||||||||||
Sbjct: 52 aattagctgccgactcattcaccca 76
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcaccca 76
|||||||||||||||||||||||||
Sbjct: 52 aattagctgccgactcattcaccca 76
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcaccca 76
|||||||||||||||||||||||||
Sbjct: 52 aattagctgccgactcattcaccca 76
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 caattagctgccgactcattcacccaaatac 81
||||||||| |||||||||||| ||||||||
Sbjct: 51 caattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 152 tcctgtatttggactgaagggagctcc 178
||||||| |||||||||||||||||||
Sbjct: 143 tcctgtacttggactgaagggagctcc 169
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 tcaattagctgccgactcattcacccaaat 79
|||||| |||||||||||||||| ||||||
Sbjct: 38 tcaatttgctgccgactcattcatccaaat 67
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctcccttatatt 186
|||||||||||||||||||||| ||||
Sbjct: 164 ttggactgaagggagctcccttgtatt 190
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 167 ttggactgaagggagctccctt 188
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 153 ttggactgaagggagctccctt 174
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 169 ttggactgaagggagctccctt 190
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccctt 181
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 167 ttggactgaagggagctccctt 188
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccctt 183
