miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 85 tttgcggttcaataaagctgtgggaagatagagaca 120
|||||||||||||||||||||||||||||| |||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacagaca 152
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 tattcttccacggctttcttgaactgca 44
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis (castor
bean)
Length = 166
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 tttgcggttcaataaagctgtgggaagata 114
||||||||||||||||||||||||||||||
Sbjct: 131 tttgcggttcaataaagctgtgggaagata 160
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
|||| ||||||||||| |||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 tttgcggttcaataaagctgtgggaagata 114
||||||||||||||||||||||||||||||
Sbjct: 71 tttgcggttcaataaagctgtgggaagata 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
|||| ||||||||||| |||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 85 tttgcggttcaataaagctgtgggaagata 114
||||||||||||||||||||||||||||||
Sbjct: 65 tttgcggttcaataaagctgtgggaagata 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
|||| ||||||||||| |||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 ttgcggttcaataaagctgtgggaagata 114
|||||||||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagata 95
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 tattcttccacggctttcttgaactgcatg 46
||||||||||| ||||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgcatg 35
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 ttgcggttcaataaagctgtgggaagata 114
|||||||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagata 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 tattcttccacggctttcttgaactgca 44
||||||||||| ||||||||||||||||
Sbjct: 6 tattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 ttgcggttcaataaagctgtgggaagata 114
|||||||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagata 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 ctttctattcttccacggctttcttgaactgcat 45
|||| ||||||||||| |||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 87 tgcggttcaataaagctgtgggaagata 114
||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagata 129
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 ctttctattcttccacggctttcttgaactgca 44
|||| ||||||||||| ||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 tcttccacggctttcttgaactgcatg 46
|||||||| ||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatg 35
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 tcttccacggctttcttgaactgcatg 46
|||||||| ||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatg 35
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tcttccacggctttcttgaactgcat 45
|||||||| |||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tcttccacggctttcttgaactgcat 45
|||||||| |||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
