miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 13 tactccctccgacccatattagttgacttagattcatctagatatgaatgtatctagtca 72
||||||||||| |||| | | ||| |||||||| | ||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatctagtca 64
Query: 73 agttttagt 81
|||||||||
Sbjct: 65 agttttagt 73
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 63.9 bits (32), Expect = 6e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 49 tctagatatgaatgtatctagtcaagttttagtgctagatacatctgaatctagacaaat 108
|||| ||||| ||||||||||||| ||||||||| |||||||||| | ||||||| ||||
Sbjct: 41 tctaaatatggatgtatctagtcacgttttagtgttagatacatccgtatctagataaat 100
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 49 tctagatatgaatgtatctagtcaagttttagt 81
|||||||||||||||||||||||| ||||||||
Sbjct: 41 tctagatatgaatgtatctagtcacgttttagt 73
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 tagatatgaatgtatctagtcaagttttagt 81
|||||||||||||||||||| ||||||||||
Sbjct: 43 tagatatgaatgtatctagttaagttttagt 73
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 54.0 bits (27), Expect = 6e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 12 atactccctccgacccatattagttgacttagattcatctagatatgaatgtatctagtc 71
|||||||||||| |||| | | ||| |||||||| ||||||||||||||||| |||||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtatgtagtc 63
Query: 72 aagtttt 78
| |||||
Sbjct: 64 acgtttt 70
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 39 cttagattcatctagatatgaatgtatctagtcaagttttagt 81
|||||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 31 cttagatttgtctaaatatgaatgtatctagtcatgttttagt 73
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 51 tagatatgaatgtatctagtcaagttttagt 81
|||||||||||||||||||| ||||||||||
Sbjct: 94 tagatatgaatgtatctagttaagttttagt 64
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 39 cttagattcatctagatatgaatgtatctagtcaagttttagtgctagatacatctgaat 98
|||||||| |||||||| | ||||||| ||||| |||| || |||||||||||| ||
Sbjct: 31 cttagatttgtctagatacggatgtatcaagtcacattttcgtattagatacatctgtat 90
Query: 99 ctagacaaat 108
||||||||||
Sbjct: 91 ctagacaaat 100
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 13 tactccctccgacccatattagttgacttagattcatctagatatgaatgtatctagtca 72
||||||||||| ||| |||| ||| ||| |||| |||||||| | |||||||||| |
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagatacggatgtatctagact 72
Query: 73 agttttagtgctagatacatctgaatctagacaaat 108
||||||||||||||| || | ||||||||||||
Sbjct: 71 cattttagtgctagatatctccgtatctagacaaat 36
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 49 tctagatatgaatgtatctagtcaagttttagtgctagatacatctgaatctagacaaat 108
|||||||| | |||||||||| | ||||||||||||| | ||||| ||||||||||||
Sbjct: 41 tctagatacggatgtatctagactcattttagtgctagacatatctgtatctagacaaat 100
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 13 tactccctccgacccatattagttgacttagattcatctagatatgaatgtatctagtca 72
||||||||||| |||| | | |||| |||| ||| |||| ||||| |||||| |||| |
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatgtatgtagtta 64
Query: 73 agttttagtgctagatacatctgaatctagacaaat 108
|||||||| |||||||||| | ||||| ||||||
Sbjct: 65 cattttagtgttagatacatccgtatctaaacaaat 100
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 13 tactccctccgacccatattagttgacttagattcatctagatatgaatgtatctagtca 72
||||||||||| |||| | | ||| |||||||| |||| ||| | ||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtctaaatacggatgtatcaagtca 64
Query: 73 agttttagtgctagatacatctgaatctagacaaat 108
|||||||| |||||||||| | |||||| |||||
Sbjct: 65 cgttttagtattagatacatccgtatctaggcaaat 100
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 39 cttagattcatctagatatgaatgtatctagtcaagtttt 78
|||||||| |||||||||||||||||||| ||| |||||
Sbjct: 31 cttagatttgtctagatatgaatgtatctaatcacgtttt 70
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 58 gaatgtatctagtcaagttttagtgctagatacatctgaatctagacaaa 107
||||||||| ||||| ||||| || |||||||||| | |||||||||||
Sbjct: 50 gaatgtatcaagtcacgtttttgtattagatacatccgtatctagacaaa 99
>RF00906;MIR1122;AY244513.1/784-861 4568:Triticum monococcum
Length = 78
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 13 tactccctccgacccatattagttgacttagatt 46
|||||||||||| |||||||| ||| ||||||||
Sbjct: 5 tactccctccgatccatattacttgtcttagatt 38
>RF00906;MIR1122;EU730894.1/121201-121325 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 atactccctccgacccatatta 33
||||||||||||||||||||||
Sbjct: 122 atactccctccgacccatatta 101
