miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| |||||||||||||||||||
Sbjct: 10 atggagaagcagggcacgtgcattactaactcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 155 ttcatgtgcccgtcttctccatcatgaccac 185
||||||||||| ||||| |||||||||||||
Sbjct: 116 ttcatgtgcccatcttccccatcatgaccac 146
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| |||||||||||||||||||
Sbjct: 10 atggagaagcagggcacgtgcattactaactcat 43
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 155 ttcatgtgcccgtcttctccatcatgacca 184
||||||||||||||||| ||||||||||||
Sbjct: 85 ttcatgtgcccgtcttccccatcatgacca 114
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| |||||||||||||||||||
Sbjct: 10 atggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| |||||||||||||||||||
Sbjct: 10 atggagaagcagggcacgtgcattactaactcat 43
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 155 ttcatgtgcccgtcttctccatcatgaccac 185
||||||||||||||||| |||||||||||||
Sbjct: 94 ttcatgtgcccgtcttccccatcatgaccac 124
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| ||||||||||||| |||||
Sbjct: 10 atggagaagcagggcacgtgcattactagctcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 155 ttcatgtgcccgtcttctccatcatgaccac 185
||||||||||| ||||| |||||||||||||
Sbjct: 141 ttcatgtgcccatcttcaccatcatgaccac 171
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| ||||||||||||| |||||
Sbjct: 10 atggagaagcagggcacgtgcattactagctcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 155 ttcatgtgcccgtcttctccatcatgaccac 185
||||||||||| ||||| |||||||||||||
Sbjct: 140 ttcatgtgcccatcttcaccatcatgaccac 170
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| ||||||||||||| |||||
Sbjct: 10 atggagaagcagggcacgtgcattactagctcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 155 ttcatgtgcccgtcttctccatcatgaccac 185
||||||||||| ||||| |||||||||||||
Sbjct: 139 ttcatgtgcccatcttcaccatcatgaccac 169
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| ||||||| |||||||||||
Sbjct: 2 atggagaagcagggcacgtgcactactaactcat 35
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| ||||||| |||||||||||
Sbjct: 10 atggagaagcagggcacgtgcaatactaactcat 43
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcat 63
|||||||||||||| ||||||||||||| |||||
Sbjct: 10 atggagaagcagggcacgtgcattactagctcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 155 ttcatgtgcccgtcttctccatcatgaccac 185
||||||||||| ||||| |||||||||||||
Sbjct: 130 ttcatgtgcccctcttccccatcatgaccac 160
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 147 gttagtgattcatgtgcccgtcttctccatcatgac 182
||||||| ||||||||||| ||||| ||||||||||
Sbjct: 257 gttagtgcttcatgtgcccctcttccccatcatgac 292
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 21 ctgatcaaaatggagaagcagggtacgtgcattactaactcat 63
|||| ||| |||||||||||||| ||||||| | |||||||||
Sbjct: 1 ctgaacaagatggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattactaactcatca 65
|||||||||||||| ||||||| | |||||||||||
Sbjct: 10 atggagaagcagggcacgtgcaatgctaactcatca 45
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattacta 57
|||||||||||||| |||||||||||||
Sbjct: 10 atggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 21 ctgatcaaaatggagaagcagggtacgtgcattactaactcat 63
|||| ||| |||||||||||||| ||||||| ||||||||||
Sbjct: 1 ctgagcaagatggagaagcagggcacgtgcaacactaactcat 43
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattact 56
|||||||||||||| ||||||||||||
Sbjct: 10 atggagaagcagggcacgtgcattact 36
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 atggagaagcagggtacgtgcattac 55
|||||||||||||| |||||||||||
Sbjct: 10 atggagaagcagggcacgtgcattac 35
