miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 83.8 bits (42), Expect = 6e-16
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatctagaca 70
||||||||||||| | ||| ||||| ||||||||||| ||| ||||||| |||||||||
Sbjct: 132 tactccctccgtcccgaaaaggatgtatcaaatttgtctaaacttggatgtatctagaca 73
Query: 71 ctatttagtatatagatt 88
||||||| ||||||||||
Sbjct: 72 ctatttaatatatagatt 55
Score = 50.1 bits (25), Expect = 8e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatcta 66
|||||||||||||| ||||| |||||||||| ||||| |||||||| |||||||
Sbjct: 4 ctactccctccgtcacaaaaaggatgtctcaagtttgtttgaatttggacgaatcta 60
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 81.8 bits (41), Expect = 2e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatctagac 69
|||||||||||||| | || ||||||||||||||||||||||||||||| |||||||||
Sbjct: 4 ctactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggataaatctagac 63
Query: 70 a 70
|
Sbjct: 64 a 64
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 67.9 bits (34), Expect = 4e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatctagac 69
|||||||||||||| | || ||||||||||| |||||||||||||| ||| ||||||||
Sbjct: 4 ctactccctccgtccaacaaaagatgtctcaagtttgtcaaaatttgaatgtatctagac 63
Query: 70 actatttagtatatagat 87
| | ||||| |||||||
Sbjct: 64 atgacttagtgtatagat 81
>RF00906;MIR1122;EU730901.1/71726-71862 15368:Brachypodium
distachyon
Length = 137
Score = 63.9 bits (32), Expect = 6e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatctagaca 70
|||||||||||||| | || |||||||||| |||||||||| ||||||| |||||||||
Sbjct: 5 tactccctccgtctaacaaaggatgtctcaagtttgtcaaaaattggatgtatctagaca 64
>RF00906;MIR1122;EU730895.1/46100-45965 15368:Brachypodium
distachyon
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatctagac 69
|||||||||||||| | || ||||||||||| || ||||||||||||||| || |||||
Sbjct: 4 ctactccctccgtccaacaaaagatgtctcaagttcgtcaaaatttggatgtatttagac 63
Query: 70 a 70
|
Sbjct: 64 a 64
>RF00906;MIR1122;EU730894.1/75460-75595 15368:Brachypodium
distachyon
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 31 agatgtctcaaatttgtcaaaatttggatgaatctagacactatttagtatatagat 87
||||||||||| |||||||||||||| || ||||||||| | |||||||||||||
Sbjct: 25 agatgtctcaagtttgtcaaaatttgaatatatctagacatgacttagtatatagat 81
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 31 agatgtctcaaatttgtcaaaatttggatgaatctagacactatttagtatatagat 87
||||||||||| ||||||||||||| |||| ||||||||| | ||||| |||||||
Sbjct: 25 agatgtctcaactttgtcaaaatttagatgtatctagacatgacttagtgtatagat 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatctagac 69
|||||||||||||| | || ||||||||||| ||| |||||||||| | | ||||| ||
Sbjct: 133 ctactccctccgtccaacaaaagatgtctcaagtttatcaaaatttgaacgtatctatac 74
Query: 70 acta 73
||||
Sbjct: 73 acta 70
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaatagatgtctcaa 41
||||||||||||||||||||||| ||||||||
Sbjct: 4 ctactccctccgtctcaaaataggtgtctcaa 35
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatg 60
||||||||||||| |||||| | ||||| ||||||||| |||| ||||||
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatggatg 54
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgt 47
||||||||||||| |||||||| ||||||||| |||||
Sbjct: 102 ctactccctccgtttcaaaataaatgtctcaactttgt 65
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgt 47
|||||||||||||| ||||||| ||||||||| |||||
Sbjct: 102 ctactccctccgtcccaaaataaatgtctcaactttgt 65
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaatagatgtctcaaatttgt 47
|||||||||||||| ||||||| ||||||||| |||||
Sbjct: 102 ctactccctccgtcccaaaataaatgtctcaactttgt 65
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaatagatgtctcaaatttgt 47
||||||||||||||||||||| |||||||| |||||
Sbjct: 101 tactccctccgtctcaaaataactgtctcaactttgt 65
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaatagatgtctcaaatttgt 47
||||||||||||||||||||| |||||||| |||||
Sbjct: 5 tactccctccgtctcaaaataactgtctcaactttgt 41
>RF00906;MIR1122;EU730897.1/80693-80828 15368:Brachypodium
distachyon
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 31 agatgtctcaaatttgtcaaaatttggatgaatctagaca 70
|||||||| || |||||||||||||| || ||||||||||
Sbjct: 25 agatgtcttaagtttgtcaaaatttgaataaatctagaca 64
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatcta 66
|||||||||||||||| | || || |||||||||||| |||| |||||| |||||
Sbjct: 121 tactccctccgtctcatattaagtgactcaaatttgtccaaatatggatgtatcta 66
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaatagatgtctcaaatttgtcaaaatttggatgaatctagac 69
|||||||||||| ||||||| ||||||| ||||| ||||| |||||| ||||||||
Sbjct: 130 tactccctccgttccaaaataagtgtctcagatttgccaaaaagtggatgtatctagac 72
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaatagatgtctcaa 41
||||||||||||||||||||| ||||||||
Sbjct: 100 tactccctccgtctcaaaataattgtctcaa 70
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaatagatgtctcaa 41
||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaa 35
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 tctactccctccgtctcaaaata 31
|||||||||||||||||||||||
Sbjct: 138 tctactccctccgtctcaaaata 116
>RF00906;MIR1122;AAAA02026044.1/32315-32427 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataga 33
|||||||||||||||||||||||
Sbjct: 109 tactccctccgtctcaaaataga 87
>RF00906;MIR1122;AC192352.2/55884-55804 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtctcaaaata 25
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 78 ctactccctccgtctcaaaata 57
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 102 ctactccctccgtctcaaaata 81
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 102 ctactccctccgtctcaaaata 81
>RF00906;MIR1122;AACV01002208.1/17153-17286 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 131 ctactccctccgtctcaaaata 110
>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 133 ctactccctccgtctcaaaata 112
