miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
           (barrel medic)
          Length = 181

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 201 gatctcggaccaggcttcattcctcacacc 230
           ||||||||||||||||||||||||||||||
Sbjct: 152 gatctcggaccaggcttcattcctcacacc 181




>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
          Length = 166

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 201 gatctcggaccaggcttcattcctcacacc 230
           ||||||||||||||||||||||||||||||
Sbjct: 137 gatctcggaccaggcttcattcctcacacc 166




>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
           Japonica Group
          Length = 135

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 201 gatctcggaccaggcttcattcctcacacc 230
           ||||||||||||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcctcacacc 135




>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
           (sorghum)
          Length = 116

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 203 tctcggaccaggcttcattcctcacacc 230
           ||||||||||||||||||||||||||||
Sbjct: 89  tctcggaccaggcttcattcctcacacc 116




>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
           cotton)
          Length = 113

 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 201 gatctcggaccaggcttcattcctcac 227
           |||||||||||||||||||||||||||
Sbjct: 84  gatctcggaccaggcttcattcctcac 110




>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
          Length = 317

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 201 gatctcggaccaggcttcattcctcacacc 230
           |||||||||||||||||||||||| |||||
Sbjct: 288 gatctcggaccaggcttcattccttacacc 317



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 16 gtgtttggaatgaagactgatccaagatcct 46
          |||||||||||||||  ||||||||||||||
Sbjct: 2  gtgtttggaatgaagtttgatccaagatcct 32




>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
          Length = 324

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 201 gatctcggaccaggcttcattcctcacacc 230
           |||||||||||||||||||||||| |||||
Sbjct: 295 gatctcggaccaggcttcattccttacacc 324



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 16 gtgtttggaatgaagactgatccaagatcct 46
          |||||||||||||||  ||||||||||||||
Sbjct: 2  gtgtttggaatgaagtttgatccaagatcct 32




>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
          Length = 122

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 201 gatctcggaccaggcttcattcctcacacc 230
           |||||||||||||||||||||||| |||||
Sbjct: 93  gatctcggaccaggcttcattcctgacacc 122




>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa Japonica
           Group
          Length = 135

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 201 gatctcggaccaggcttcattcctcacacc 230
           ||||||||| ||||||||||||||||||||
Sbjct: 106 gatctcggatcaggcttcattcctcacacc 135




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 200 cgatctcggaccaggcttcattcc 223
           ||||||||||||||||||||||||
Sbjct: 67  cgatctcggaccaggcttcattcc 90




>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 96  gatctcggaccaggcttcattcc 118




>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
           (papaya)
          Length = 138

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 109 gatctcggaccaggcttcattcc 131




>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
          Length = 94

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 65  gatctcggaccaggcttcattcc 87




>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
          Length = 92

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 63  gatctcggaccaggcttcattcc 85




>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
           (castor bean)
          Length = 94

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 65  gatctcggaccaggcttcattcc 87




>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
           (barrel medic)
          Length = 92

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 63  gatctcggaccaggcttcattcc 85




>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
           (barrel medic)
          Length = 170

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 202 atctcggaccaggcttcattcct 224
           |||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcct 164




>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
           (barrel medic)
          Length = 105

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 203 tctcggaccaggcttcattcctc 225
           |||||||||||||||||||||||
Sbjct: 78  tctcggaccaggcttcattcctc 100




>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 61  gatctcggaccaggcttcattcc 83




>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
          Length = 119

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 90  gatctcggaccaggcttcattcc 112




>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 85  gatctcggaccaggcttcattcc 107




>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
          Length = 88

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 203 tctcggaccaggcttcattcctc 225
           |||||||||||||||||||||||
Sbjct: 61  tctcggaccaggcttcattcctc 83




>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
          Length = 122

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 95  gatctcggaccaggcttcattcc 117




>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
          Length = 212

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattcc 207




>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 89  gatctcggaccaggcttcattcc 111




>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
           (sorghum)
          Length = 191

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattcc 184




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
           (sorghum)
          Length = 97

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 68  gatctcggaccaggcttcattcc 90




>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 160

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattcc 153




>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
           Indica Group
          Length = 180

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattcc 173




>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
           Group
          Length = 179

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattcc 172




>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 92  gatctcggaccaggcttcattcc 114




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
           Japonica Group
          Length = 103

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 201 gatctcggaccaggcttcattcc 223
           |||||||||||||||||||||||
Sbjct: 74  gatctcggaccaggcttcattcc 96




>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
           trichocarpa
          Length = 144

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 203 tctcggaccaggcttcattcct 224
           ||||||||||||||||||||||
Sbjct: 117 tctcggaccaggcttcattcct 138




>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
           (barrel medic)
          Length = 104

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 202 atctcggaccaggcttcattcc 223
           ||||||||||||||||||||||
Sbjct: 76  atctcggaccaggcttcattcc 97




>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
          Length = 98

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 204 ctcggaccaggcttcattcctc 225
           ||||||||||||||||||||||
Sbjct: 72  ctcggaccaggcttcattcctc 93