miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 65.9 bits (33), Expect = 2e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 122 caacgatgcatgagctgtatttagctatcgctgtcgcgtcttggactgaagggagctccc 181
|||||||||| |||||| || || ||| |||||| ||||||||||||||||||||||||
Sbjct: 124 caacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaagggagctccc 183
Query: 182 t 182
|
Sbjct: 184 t 184
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 154 gtcgcgtcttggactgaagggagctccct 182
|||||||||||||||||||||||||||||
Sbjct: 192 gtcgcgtcttggactgaagggagctccct 220
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 aaggagctctctccagtccagtccgaggc 37
|||||||||||| ||||||||||||||||
Sbjct: 10 aaggagctctcttcagtccagtccgaggc 38
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 133 gagctgtatttagctatcgctgtcgcgtcttggactgaagggagctccct 182
||||||| || || ||| |||||| ||||||||||||||||||||||||
Sbjct: 131 gagctgtgttcagttatggctgtcatgtcttggactgaagggagctccct 180
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccct 187
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 160 cttggactgaagggagctccct 181
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 158 cttggactgaagggagctccct 179
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 152 cttggactgaagggagctccct 173
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccct 189
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 191 cttggactgaagggagctccct 212
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccct 183
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 166 cttggactgaagggagctccct 187
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccct 182
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccct 172
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 148 tcttggactgaagggagctccc 169
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctccc 168
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 149 tcttggactgaagggagctccc 170
