miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 60.0 bits (30), Expect = 1e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 20 ctactccctccgtctcaaaatagatgtctcagatttgtcaaaatttgaatgaaactagac 79
|||||||||||||| | || |||||||||| |||||||||||||||||| | ||||||
Sbjct: 4 ctactccctccgtccaacaaaagatgtctcaagtttgtcaaaatttgaatgtatctagac 63
Query: 80 acaatttagtatatagat 97
| | ||||| |||||||
Sbjct: 64 atgacttagtgtatagat 81
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 20 ctactccctccgtctcaaaatagatgtctcagatttgtcaaaatttgaatgaaactagac 79
|||||||||||||| | || |||||||||| ||||||||||||||| || || ||||||
Sbjct: 4 ctactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggataaatctagac 63
Query: 80 a 80
|
Sbjct: 64 a 64
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 ctactccctccgtctcaaaatagatgtctca 50
||||||||||||||||||||||| |||||||
Sbjct: 4 ctactccctccgtctcaaaataggtgtctca 34
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 54.0 bits (27), Expect = 6e-07
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 21 tactccctccgtctcaaaatagatgtctcagatttgtcaaaatttgaatgaaactagaca 80
||||||||||||| | ||| ||||| ||| ||||||| ||| ||| ||| | |||||||
Sbjct: 132 tactccctccgtcccgaaaaggatgtatcaaatttgtctaaacttggatgtatctagaca 73
Query: 81 caatttagtatatagattc 99
| ||||| |||||||||||
Sbjct: 72 ctatttaatatatagattc 54
>RF00906;MIR1122;EU730894.1/75460-75595 15368:Brachypodium
distachyon
Length = 136
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 41 agatgtctcagatttgtcaaaatttgaatgaaactagacacaatttagtatatagat 97
|||||||||| ||||||||||||||||| | ||||||| | |||||||||||||
Sbjct: 25 agatgtctcaagtttgtcaaaatttgaatatatctagacatgacttagtatatagat 81
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaatagatgtctca 50
||||||||||||| |||||||| ||||||||
Sbjct: 102 ctactccctccgtttcaaaataaatgtctca 72
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaatagatgtctca 50
|||||||||||||| ||||||| ||||||||
Sbjct: 102 ctactccctccgtcccaaaataaatgtctca 72
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaatagatgtctca 50
|||||||||||||| ||||||| ||||||||
Sbjct: 102 ctactccctccgtcccaaaataaatgtctca 72
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 tctactccctccgtctcaaaata 41
|||||||||||||||||||||||
Sbjct: 138 tctactccctccgtctcaaaata 116
>RF00906;MIR1122;AAAA02026044.1/32315-32427 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 tactccctccgtctcaaaataga 43
|||||||||||||||||||||||
Sbjct: 109 tactccctccgtctcaaaataga 87
>RF00906;MIR1122;AC192352.2/55884-55804 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ctactccctccgtctcaaaata 41
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtctcaaaata 25
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaata 41
||||||||||||||||||||||
Sbjct: 78 ctactccctccgtctcaaaata 57
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 21 tactccctccgtctcaaaatagatgtctcagatttgtcaaaa 62
|||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 130 tactccctccgttccaaaataagtgtctcagatttgccaaaa 89
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 21 tactccctccgtctcaaaatagatgtctca 50
||||||||||||||||||||| |||||||
Sbjct: 101 tactccctccgtctcaaaataactgtctca 72
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 21 tactccctccgtctcaaaatagatgtctca 50
||||||||||||||||||||| |||||||
Sbjct: 100 tactccctccgtctcaaaataattgtctca 71
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaata 41
||||||||||||||||||||||
Sbjct: 102 ctactccctccgtctcaaaata 81
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 tactccctccgtctcaaaatagatgtctca 50
||||||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtctcaaaataactgtctca 34
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaata 41
||||||||||||||||||||||
Sbjct: 102 ctactccctccgtctcaaaata 81
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 21 tactccctccgtctcaaaatagatgtctca 50
||||||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtctca 34
>RF00906;MIR1122;EU730897.1/80693-80828 15368:Brachypodium
distachyon
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 53 tttgtcaaaatttgaatgaaactagacacaatttagtatata 94
||||||||||||||||| || ||||||| || ||||| ||||
Sbjct: 37 tttgtcaaaatttgaataaatctagacataacttagtgtata 78
>RF00906;MIR1122;AACV01002208.1/17153-17286 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaata 41
||||||||||||||||||||||
Sbjct: 131 ctactccctccgtctcaaaata 110
>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 ctactccctccgtctcaaaata 41
||||||||||||||||||||||
Sbjct: 133 ctactccctccgtctcaaaata 112
