miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABIM01016024.1/6261-6158 3649:Carica papaya
(papaya)
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 82 gattgagccgcgtcaatatctccttc 107
||||||||||||||||||||||||||
Sbjct: 73 gattgagccgcgtcaatatctccttc 98
>RF00643;MIR171_1;EU950482.1/151-254 4577:Zea mays
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 79 ttggattgagccgcgtcaatatctcc 104
||||||||||||||||||||||||||
Sbjct: 70 ttggattgagccgcgtcaatatctcc 95
>RF00643;MIR171_1;ABXC01000173.1/152883-152783 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 79 ttggattgagccgcgtcaatatctcc 104
||||||||||||||||||||||||||
Sbjct: 67 ttggattgagccgcgtcaatatctcc 92
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
(castor bean)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 82 gattgagccgcgtcaatatctcctt 106
|||||||||||||||||||||||||
Sbjct: 74 gattgagccgcgtcaatatctcctt 98
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 82 gattgagccgcgtcaatatctcctt 106
|||||||||||||||||||||||||
Sbjct: 72 gattgagccgcgtcaatatctcctt 96
>RF00643;MIR171_1;AC147962.1/85803-85682 39947:Oryza sativa Japonica
Group
Length = 122
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 ttggattgagccgcgtcaatatctc 103
|||||||||||||||||||||||||
Sbjct: 88 ttggattgagccgcgtcaatatctc 112
