miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 83.8 bits (42), Expect = 6e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 55 tttggatgaatctatatactaaatagtgtctagattcatccaaattttaacaaatttgag 114
|||||| ||||||||||| |||||||||||||||| ||||||| ||| ||||||||||
Sbjct: 47 tttggacgaatctatatattaaatagtgtctagatacatccaagtttagacaaatttgat 106
Query: 115 acatctattttaggacggagggagta 140
||||| ||| ||||||||||||||
Sbjct: 107 acatccttttcgggacggagggagta 132
Score = 54.0 bits (27), Expect = 6e-07
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 85 tagattcatccaaattttaacaaatttgagacatctattttaggacggagggagtagtt 143
||||||| |||||||| |||||| |||||||||| |||| ||||||||||||||||
Sbjct: 60 tagattcgtccaaattcaaacaaacttgagacatcctttttgtgacggagggagtagtt 2
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 81.8 bits (41), Expect = 2e-15
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 81 tgtctagattcatccaaattttaacaaatttgagacatctattttaggacggagggagta 140
|||||||||| ||||||||||| ||||||||||||||||| || | ||||||||||||||
Sbjct: 64 tgtctagatttatccaaattttgacaaatttgagacatcttttattggacggagggagta 5
Query: 141 g 141
|
Sbjct: 4 g 4
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccaagaatagatgtcttaggtttttcaaattttggatgaatcta 68
||||||||||||||||| || |||||||| | ||| ||||| ||||||| ||||||
Sbjct: 4 ctactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggataaatcta 60
>RF00906;MIR1122;EU730897.1/94709-94844 15368:Brachypodium
distachyon
Length = 136
Score = 81.8 bits (41), Expect = 2e-15
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccaagaatagatgtcttaggtttttcaaattttggatgaatctatat 71
||||||||||||||||| || |||||||| | |||| ||||| |||| | | |||||||
Sbjct: 133 ctactccctccgtccaacaaaagatgtctcaagtttatcaaaatttgaacgtatctatac 74
Query: 72 actaaatagtgtctagattcatccaaattttaacaaatttgagacatct 120
||||| | ||||||||| |||| ||||||| ||||| |||||||||||
Sbjct: 73 actaagtcatgtctagatacatctaaattttgacaaagttgagacatct 25
Score = 54.0 bits (27), Expect = 6e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 78 tagtgtctagattcatccaaattttaacaaatttgagacatctattttaggacggaggga 137
|||||| ||||| | | |||||||| | ||| ||||||||||| || | |||||||||||
Sbjct: 70 tagtgtatagatacgttcaaattttgataaacttgagacatcttttgttggacggaggga 129
Query: 138 gtagttt 144
|||||||
Sbjct: 130 gtagttt 136
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 73.8 bits (37), Expect = 6e-13
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 55 tttggatgaatctatatactaaatagtgtctagattcatccaaattttaacaaatttgag 114
|||| ||| ||||||| ||||| | ||||||||| ||| |||||||| ||||| |||||
Sbjct: 90 tttgaatgcatctatacactaagtcatgtctagatacattcaaattttgacaaacttgag 31
Query: 115 acatctattttaggacggagggagtagtt 143
|||||| || | |||||||||||||||||
Sbjct: 30 acatcttttgttggacggagggagtagtt 2
Score = 50.1 bits (25), Expect = 9e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccaagaatagatgtcttaggtttttcaaattttggatgaatcta 68
||||||||||||||||| || |||||||| | |||| ||||| |||| ||| |||||
Sbjct: 4 ctactccctccgtccaacaaaagatgtctcaagtttgtcaaaatttgaatgtatcta 60
>RF00906;MIR1122;EU730898.1/64006-63871 15368:Brachypodium
distachyon
Length = 136
Score = 63.9 bits (32), Expect = 6e-10
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 13 tactccctccgtccaagaatagatgtcttaggtttttcaaattttggatgaatctatata 72
|||||||||||||||| || |||||||| |||||| | ||| |||||||| ||| | | |
Sbjct: 5 tactccctccgtccaacaaaagatgtctcaggtttattaaaatttggatgtatccagaca 64
Query: 73 ctaaatagtgtctagattcatccaaattttaacaaatttgagacatctattttaggacgg 132
| |||||| ||||| ||| ||||||| | |||| |||||||||| || | ||||||
Sbjct: 65 taacctagtgtatagatgcattcaaatttgatcaaagttgagacatcctttgttggacgg 124
Query: 133 agggagta 140
||||||||
Sbjct: 125 agggagta 132
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 81 tgtctagattcatccaaattttaacaaatttgagacatctattttaggacggagggagta 140
||||| ||| |||||||||||||| ||| |||||||||| || | ||||||||||||||
Sbjct: 64 tgtctggatacatccaaattttaataaacctgagacatcttttgttggacggagggagta 5
>RF00906;MIR1122;EU730895.1/46100-45965 15368:Brachypodium
distachyon
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 81 tgtctagattcatccaaattttaacaaatttgagacatctattttaggacggagggagta 140
|||||| || |||||||||||| || || ||||||||||| || | ||||||||||||||
Sbjct: 64 tgtctaaatacatccaaattttgacgaacttgagacatcttttgttggacggagggagta 5
Query: 141 gtt 143
|||
Sbjct: 4 gtt 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccaagaatagatgtcttaggtttttcaaattttggatg 62
||||||||||||||||| || |||||||| | ||| ||||| ||||||||
Sbjct: 4 ctactccctccgtccaacaaaagatgtctcaagttcgtcaaaatttggatg 54
>RF00906;MIR1122;EU730894.1/75460-75595 15368:Brachypodium
distachyon
Length = 136
Score = 60.0 bits (30), Expect = 9e-09
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 55 tttggatgaatctatatactaaatagtgtctagattcatccaaattttaacaaatttgag 114
|||| ||| ||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 90 tttgaatgcatctatatactaagtcatgtctagatatattcaaattttgacaaacttgag 31
Query: 115 acatctattttaggacggagggagta 140
|||||| || | ||||| ||||||||
Sbjct: 30 acatcttttgttggacgaagggagta 5
>RF00906;MIR1122;EF059989.1/67769-67635 29664:Brachypodium
sylvaticum
Length = 135
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 98 attttaacaaatttgagacatctattttaggacggagggagtagt 142
||||||| ||||||| |||||| |||||||||||||||||||||
Sbjct: 89 attttaaaaaatttgcgacatcctttttaggacggagggagtagt 133
>RF00906;MIR1122;EU730897.1/80693-80828 15368:Brachypodium
distachyon
Length = 136
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 13 tactccctccgtccaagaatagatgtcttaggtttttcaaattttggatgaatcta 68
||||| ||||||||||||| |||||||||| |||| ||||| |||| || ||||||
Sbjct: 5 tactcactccgtccaagaaaagatgtcttaagtttgtcaaaatttgaataaatcta 60
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 104 acaaatttgagacatctattttaggacggagggagtagt 142
||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggagggagtagt 103
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 104 acaaatttgagacatctattttaggacggagggagtagt 142
||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggagggagtagt 103
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 104 acaaatttgagacatctattttaggacggagggagtagt 142
||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 65 acaaagttgagtcatctattttagaacggagggagtagt 103
>RF00906;MIR1122;AP008218.1/11741623-11741744 39947:Oryza sativa
Japonica Group
Length = 122
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 120 tattttaggacggagggagtagttt 144
|||||||||||||||||||||||||
Sbjct: 25 tattttaggacggagggagtagttt 1
>RF00906;MIR1122;AP008208.1/1673372-1673471 39947:Oryza sativa
Japonica Group
Length = 100
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 120 tattttaggacggagggagtagttt 144
|||||||||||||||||||||||||
Sbjct: 25 tattttaggacggagggagtagttt 1
>RF00906;MIR1122;EU730901.1/71726-71862 15368:Brachypodium
distachyon
Length = 137
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 81 tgtctagattcatccaaattttaacaaatttgagacatctattttaggacggagggagta 140
||||||||| ||||||| |||| ||||| |||||||||| || | |||||||||||||
Sbjct: 64 tgtctagatacatccaatttttgacaaacttgagacatcctttgttagacggagggagta 5
>RF00906;MIR1122;AAAA02013867.1/52-181 39946:Oryza sativa Indica
Group
Length = 130
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 120 tattttaggacggagggagtagtt 143
||||||||||||||||||||||||
Sbjct: 106 tattttaggacggagggagtagtt 129
>RF00906;MIR1122;AAAA02010499.1/21534-21382 39946:Oryza sativa
Indica Group
Length = 153
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 120 tattttaggacggagggagtagtt 143
||||||||||||||||||||||||
Sbjct: 129 tattttaggacggagggagtagtt 152
>RF00906;MIR1122;DJ053679.1/1921-2077 4530:Oryza sativa (rice)
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 tattttaggacggagggagtagt 142
|||||||||||||||||||||||
Sbjct: 133 tattttaggacggagggagtagt 155
>RF00906;MIR1122;AACV01005176.1/8457-8346 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 120 tattttaggacggagggagtagt 142
|||||||||||||||||||||||
Sbjct: 25 tattttaggacggagggagtagt 3
>RF00906;MIR1122;AP008214.1/19205826-19205903 39947:Oryza sativa
Japonica Group
Length = 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 tattttaggacggagggagtagt 142
|||||||||||||||||||||||
Sbjct: 54 tattttaggacggagggagtagt 76
>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa Japonica
Group
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 120 tattttaggacggagggagtagt 142
|||||||||||||||||||||||
Sbjct: 25 tattttaggacggagggagtagt 3
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 91 catccaaattttaacaaatttgagacatctattttaggacggagggagta 140
|||||| |||| |||||||| ||||| | ||||| ||||||||||||||
Sbjct: 54 catccatatttagacaaatttaagacaacaattttgggacggagggagta 5
>RF00906;MIR1122;AAAA02034559.1/3133-3272 39946:Oryza sativa Indica
Group
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 tattttaggacggagggagtag 141
||||||||||||||||||||||
Sbjct: 116 tattttaggacggagggagtag 137
>RF00906;MIR1122;AP003928.3/87481-87370 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 tattttaggacggagggagtag 141
||||||||||||||||||||||
Sbjct: 88 tattttaggacggagggagtag 109
>RF00906;MIR1122;AP008217.1/6570444-6570554 39947:Oryza sativa
Japonica Group
Length = 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 121 attttaggacggagggagtagt 142
||||||||||||||||||||||
Sbjct: 24 attttaggacggagggagtagt 3
