miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
Length = 175
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 84 gaagttcaagaaagccgtggaaaaatatga 113
|||||||||||||||||||| |||||||||
Sbjct: 143 gaagttcaagaaagccgtgggaaaatatga 172
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaa 107
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaa 9
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 11 tttcccacggctttcttgagcttct 35
|||||||||||||||||||||||||
Sbjct: 99 tttcccacggctttcttgagcttct 75
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaaatatga 113
|||||||||||||| ||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaaatatga 3
>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus trichocarpa
Length = 171
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 2 ctttaataatttcccacggctttcttgagctt 33
|||| ||| |||||||||||||||||||||||
Sbjct: 171 ctttcatattttcccacggctttcttgagctt 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaa 107
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaa 9
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaaatatgac 114
||||||||||||||| ||||||||| |||||
Sbjct: 32 gaagttcaagaaagctgtggaaaaacatgac 2
>RF00648;MIR396;FJ647794.1/154-54 64478:Actinidia arguta
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaaatat 111
|||||||||||| ||||||||||||||
Sbjct: 31 aagttcaagaaaaccgtggaaaaatat 5
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly pine)
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaaatatgaca 115
|||||||||||||| |||||||| |||||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgaca 1
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana (thale
cress)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 85 aagttcaagaaagccgtggaaaaatatgac 114
|||||||||||||| |||||||| ||||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgac 2
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaa 105
||||||||||||||||||||||
Sbjct: 32 gaagttcaagaaagccgtggaa 11
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 ggaagttcaagaaagccgtggaaaaa 108
|||||||||||||||| |||||||||
Sbjct: 72 ggaagttcaagaaagctgtggaaaaa 97
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus trichocarpa
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 tcccacggctttcttgagcttc 34
||||||||||||||||||||||
Sbjct: 146 tcccacggctttcttgagcttc 125
>RF00648;MIR396;AARH01003151.1/856908-856779 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 agttcaagaaagccgtggaaaa 107
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagccgtggaaaa 9
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 84 gaagttcaagaaagccgtggaaaaatatga 113
||||||||||||||| ||||||||| ||||
Sbjct: 32 gaagttcaagaaagctgtggaaaaacatga 3
