miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
          Length = 175

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 84  gaagttcaagaaagccgtggaaaaatatga 113
           |||||||||||||||||||| |||||||||
Sbjct: 143 gaagttcaagaaagccgtgggaaaatatga 172



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 85  aagttcaagaaagccgtggaaaa 107
           |||||||||||||||||||||||
Sbjct: 31  aagttcaagaaagccgtggaaaa 9



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 12  ttcccacggctttcttgagcttcgta 37
           |||||||||||||||||| |||||||
Sbjct: 165 ttcccacggctttcttgaacttcgta 140




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 85  aagttcaagaaagccgtggaaaaatatgag 114
           |||||||||||||| |||||||||||||||
Sbjct: 31  aagttcaagaaagctgtggaaaaatatgag 2




>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus trichocarpa
          Length = 171

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 85  aagttcaagaaagccgtggaaaa 107
           |||||||||||||||||||||||
Sbjct: 31  aagttcaagaaagccgtggaaaa 9



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ttcccacggctttcttgagctt 33
           ||||||||||||||||||||||
Sbjct: 161 ttcccacggctttcttgagctt 140




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 12 ttcccacggctttcttgagcttc 34
          |||||||||||||||||||||||
Sbjct: 98 ttcccacggctttcttgagcttc 76




>RF00648;MIR396;FJ647794.1/154-54 64478:Actinidia arguta
          Length = 101

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 85  aagttcaagaaagccgtggaaaaatat 111
           |||||||||||| ||||||||||||||
Sbjct: 31  aagttcaagaaaaccgtggaaaaatat 5




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
           (papaya)
          Length = 159

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 84  gaagttcaagaaagccgtggaaaaatatga 113
           ||||||||||||||| ||||||||| ||||
Sbjct: 32  gaagttcaagaaagctgtggaaaaacatga 3




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
           trichocarpa
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 84  gaagttcaagaaagccgtggaa 105
           ||||||||||||||||||||||
Sbjct: 32  gaagttcaagaaagccgtggaa 11



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 83  ggaagttcaagaaagccgtggaaaaa 108
           |||||||||||||||| |||||||||
Sbjct: 72  ggaagttcaagaaagctgtggaaaaa 97




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus trichocarpa
          Length = 157

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 13  tcccacggctttcttgagcttc 34
           ||||||||||||||||||||||
Sbjct: 146 tcccacggctttcttgagcttc 125




>RF00648;MIR396;AARH01003151.1/856908-856779 3694:Populus
           trichocarpa
          Length = 130

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 86  agttcaagaaagccgtggaaaa 107
           ||||||||||||||||||||||
Sbjct: 30  agttcaagaaagccgtggaaaa 9




>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
          Length = 261

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 84  gaagttcaagaaagccgtggaaaaatatga 113
           ||||||||||||||| ||||||||| ||||
Sbjct: 32  gaagttcaagaaagctgtggaaaaacatga 3