miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 92 gtctagattcatccaaatctagacaaatccaagtcaattaatatggatcggagggagta 150
|||||||| ||||| ||||||||||||||||| ||| |||| |||| |||||||||||
Sbjct: 73 gtctagatacatccgtatctagacaaatccaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;AY083681.1/2468-2333 4498:Avena sativa (oat)
Length = 136
Score = 58.0 bits (29), Expect = 4e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 63 aatttggatgaacctacatactaaatagtgtctagattcatccaaatctagacaaat 119
|||||||| ||| ||| ||| |||||||||||||||| ||||||| | |||||||||
Sbjct: 45 aatttggacgaatctatatattaaatagtgtctagatacatccaagtttagacaaat 101
>RF00906;MIR1122;X95256.1/1628-1548 4513:Hordeum vulgare
Length = 81
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 126 caattaatatggatcggagggagtat 151
||||||||||||||||||||||||||
Sbjct: 53 caattaatatggatcggagggagtat 78
>RF00906;MIR1122;AY244513.1/784-861 4568:Triticum monococcum
Length = 78
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 114 acaaatccaagtcaattaatatggatcggagggagta 150
||||||| ||| ||| |||||||||||||||||||||
Sbjct: 41 acaaatctaagacaagtaatatggatcggagggagta 5
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 126 caattaatatggatcggagggagta 150
|||||||||||||||||||||||||
Sbjct: 29 caattaatatggatcggagggagta 5
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 126 caattaatatggatcggagggagta 150
|||||||||||||||||||||||||
Sbjct: 87 caattaatatggatcggagggagta 111
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 22 gtactccctccgacccatattaattg 47
||||||||||||| ||||||||||||
Sbjct: 112 gtactccctccgatccatattaattg 87
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 22 gtactccctccgacccatattaattgac 49
|||||||||||| |||||||||||||||
Sbjct: 122 gtactccctccgtcccatattaattgac 95
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 108 atctagacaaatccaagtcaattaatatggatcggagggagta 150
||||||||||||| ||| ||| |||| |||| |||||||||||
Sbjct: 89 atctagacaaatcgaagacaagtaatttggaacggagggagta 131
>RF00906;MIR1122;EF567062.1/42666-42586 4565:Triticum aestivum
(bread wheat)
Length = 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 124 gtcaattaatatggatcggagggagta 150
|||||||||| ||||||||||||||||
Sbjct: 31 gtcaattaatttggatcggagggagta 5
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 125 tcaattaatatggatcggagggagta 150
||||||||| ||||||||||||||||
Sbjct: 52 tcaattaatttggatcggagggagta 77
>RF00906;MIR1122;EU862626.1/121-201 112516:Hordeum marinum subsp.
marinum
Length = 81
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 126 caattaatatggatcggagggagtat 151
|||||||||||||| |||||||||||
Sbjct: 29 caattaatatggattggagggagtat 4
>RF00906;MIR1122;EU730897.1/72285-72181 15368:Brachypodium
distachyon
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 133 tatggatcggagggagtatata 154
||||||||||||||||||||||
Sbjct: 84 tatggatcggagggagtatata 105
